miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29475 5' -61.9 NC_006151.1 + 49942 0.66 0.680744
Target:  5'- -aUCCgCCGggaccuggCCGCGGCCcuGGCCGg- -3'
miRNA:   3'- cgAGG-GGCa-------GGUGCCGGucCUGGCac -5'
29475 5' -61.9 NC_006151.1 + 64364 0.66 0.680744
Target:  5'- gGC-CCCCcagCgCACGGUCGaGGCCGUGg -3'
miRNA:   3'- -CGaGGGGca-G-GUGCCGGUcCUGGCAC- -5'
29475 5' -61.9 NC_006151.1 + 4938 0.66 0.680744
Target:  5'- aGCggCCCGUCgGuCGGCgGGGGcCCGUc -3'
miRNA:   3'- -CGagGGGCAGgU-GCCGgUCCU-GGCAc -5'
29475 5' -61.9 NC_006151.1 + 127361 0.66 0.680744
Target:  5'- --gUCUCGcCCugGGCgGGGACCGc- -3'
miRNA:   3'- cgaGGGGCaGGugCCGgUCCUGGCac -5'
29475 5' -61.9 NC_006151.1 + 102495 0.66 0.680744
Target:  5'- uGCUUCauggaCG-CCGCGGCgCGGGACCc-- -3'
miRNA:   3'- -CGAGGg----GCaGGUGCCG-GUCCUGGcac -5'
29475 5' -61.9 NC_006151.1 + 111652 0.66 0.679773
Target:  5'- uGCUCggCCGUgaUCGCGGCCAGGggggcgucggcggGCCGg- -3'
miRNA:   3'- -CGAGg-GGCA--GGUGCCGGUCC-------------UGGCac -5'
29475 5' -61.9 NC_006151.1 + 79322 0.66 0.67783
Target:  5'- cCUCCCCGgcgggACGGCCGGGugaaacccgcgucgGCCGa- -3'
miRNA:   3'- cGAGGGGCagg--UGCCGGUCC--------------UGGCac -5'
29475 5' -61.9 NC_006151.1 + 73699 0.66 0.67783
Target:  5'- gGCUCUgCG-CCGCGuGCUGGGccacgggcuggcgcACCGUGg -3'
miRNA:   3'- -CGAGGgGCaGGUGC-CGGUCC--------------UGGCAC- -5'
29475 5' -61.9 NC_006151.1 + 132073 0.66 0.67102
Target:  5'- gGCUCCUCGaCCA-GGUCGGcGCCGUc -3'
miRNA:   3'- -CGAGGGGCaGGUgCCGGUCcUGGCAc -5'
29475 5' -61.9 NC_006151.1 + 32565 0.66 0.67102
Target:  5'- uCUCCCgGgcacCCGCGGCCGGG-CgGa- -3'
miRNA:   3'- cGAGGGgCa---GGUGCCGGUCCuGgCac -5'
29475 5' -61.9 NC_006151.1 + 41538 0.66 0.67102
Target:  5'- aGC-CCCCGcCCGCGGaCCcccGGugCGa- -3'
miRNA:   3'- -CGaGGGGCaGGUGCC-GGu--CCugGCac -5'
29475 5' -61.9 NC_006151.1 + 129163 0.66 0.67102
Target:  5'- gGCUCUCgG-CCACGucGCgCAGGGCCGc- -3'
miRNA:   3'- -CGAGGGgCaGGUGC--CG-GUCCUGGCac -5'
29475 5' -61.9 NC_006151.1 + 139608 0.66 0.67102
Target:  5'- gGCggCCCGUCCgggcGCGGCUgGGGGCCa-- -3'
miRNA:   3'- -CGagGGGCAGG----UGCCGG-UCCUGGcac -5'
29475 5' -61.9 NC_006151.1 + 77892 0.66 0.67102
Target:  5'- cGCcCCCCGcUCagcggcgagaCGCGGCCcacGGCCGUGg -3'
miRNA:   3'- -CGaGGGGC-AG----------GUGCCGGuc-CUGGCAC- -5'
29475 5' -61.9 NC_006151.1 + 61445 0.66 0.67102
Target:  5'- cGCccgCCCgCGUCCGCcGCCAugugcGGGCCGc- -3'
miRNA:   3'- -CGa--GGG-GCAGGUGcCGGU-----CCUGGCac -5'
29475 5' -61.9 NC_006151.1 + 13013 0.66 0.661266
Target:  5'- aUUCCCUGUCCcucggggcGCGGCCGacccGGCgGUGa -3'
miRNA:   3'- cGAGGGGCAGG--------UGCCGGUc---CUGgCAC- -5'
29475 5' -61.9 NC_006151.1 + 103806 0.66 0.661266
Target:  5'- gGCcgCgCUGUCgGCGGCCguggcGGcGGCCGUGg -3'
miRNA:   3'- -CGa-GgGGCAGgUGCCGG-----UC-CUGGCAC- -5'
29475 5' -61.9 NC_006151.1 + 11516 0.66 0.661266
Target:  5'- --gCCCCGcCCGCGGCacuccGGGCCcgcGUGa -3'
miRNA:   3'- cgaGGGGCaGGUGCCGgu---CCUGG---CAC- -5'
29475 5' -61.9 NC_006151.1 + 49446 0.66 0.651491
Target:  5'- cGCguaCCUCGUCCAgacgGGCCGGGcccCCGUc -3'
miRNA:   3'- -CGa--GGGGCAGGUg---CCGGUCCu--GGCAc -5'
29475 5' -61.9 NC_006151.1 + 81549 0.66 0.651491
Target:  5'- cGCUCCgCGgugCaCAUGGCCGuGGugCGg- -3'
miRNA:   3'- -CGAGGgGCa--G-GUGCCGGU-CCugGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.