miRNA display CGI


Results 81 - 100 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 82972 0.66 0.745079
Target:  5'- gUCACCuccauGCcGCGcgucuGCGCCGCCACgGCc -3'
miRNA:   3'- -GGUGGu----CGuCGU-----CGUGGUGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 71024 0.66 0.745079
Target:  5'- gCCGCgAGCucGCGGaGCUGCgCGCCGCg -3'
miRNA:   3'- -GGUGgUCGu-CGUCgUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 61708 0.66 0.745079
Target:  5'- -gACCAGCuucuucGGCuuCACgGCCACCGUg -3'
miRNA:   3'- ggUGGUCG------UCGucGUGgUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 24523 0.66 0.745079
Target:  5'- gCCGCCAcguuGCAGC-GCGCgGCC-CCGa- -3'
miRNA:   3'- -GGUGGU----CGUCGuCGUGgUGGuGGCga -5'
29476 3' -59.5 NC_006151.1 + 91296 0.67 0.6862
Target:  5'- gCCGCguCAGCAGCcGCGCCgggaaGgCGCCGUa -3'
miRNA:   3'- -GGUG--GUCGUCGuCGUGG-----UgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 69983 0.67 0.6862
Target:  5'- gCugCAGCGGCGGCAgCGUCAgcaCGCUc -3'
miRNA:   3'- gGugGUCGUCGUCGUgGUGGUg--GCGA- -5'
29476 3' -59.5 NC_006151.1 + 138429 0.67 0.6862
Target:  5'- uUCGCUacaaagugcGGCAGCAacgcgacgcGCACCAuuuUCACCGCg -3'
miRNA:   3'- -GGUGG---------UCGUCGU---------CGUGGU---GGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 11894 0.67 0.6852
Target:  5'- gCCGCaucgaGGCGcgucgggguuuucGCGcccucGCGCCGCCGCCGCc -3'
miRNA:   3'- -GGUGg----UCGU-------------CGU-----CGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 3233 0.67 0.680194
Target:  5'- gCCGCauccaGGCGGCgcggcggcggagcggGGCGCCGCgGCgCGCg -3'
miRNA:   3'- -GGUGg----UCGUCG---------------UCGUGGUGgUG-GCGa -5'
29476 3' -59.5 NC_006151.1 + 129158 0.67 0.677186
Target:  5'- aCACUGGCucucggccacgucgcGCAGgGCCGCCACgGCc -3'
miRNA:   3'- gGUGGUCGu--------------CGUCgUGGUGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 138337 0.67 0.676183
Target:  5'- cCCGgCAcGCGcGCAGC-CCGCCGgcCCGCa -3'
miRNA:   3'- -GGUgGU-CGU-CGUCGuGGUGGU--GGCGa -5'
29476 3' -59.5 NC_006151.1 + 108089 0.67 0.6862
Target:  5'- uCCACCAuCcGCcGCgACCGCgGCCGCg -3'
miRNA:   3'- -GGUGGUcGuCGuCG-UGGUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 65836 0.67 0.6862
Target:  5'- gCGCCAGC-GCGGCccggcucacGCCuCCuCCGCUc -3'
miRNA:   3'- gGUGGUCGuCGUCG---------UGGuGGuGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 52001 0.67 0.696173
Target:  5'- -uGCCGGCGuGCAGC--UugCGCCGCg -3'
miRNA:   3'- ggUGGUCGU-CGUCGugGugGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 70794 0.67 0.696173
Target:  5'- gCACCGGCguggccgucgugGGCAGCuACCGgCGCaGCUg -3'
miRNA:   3'- gGUGGUCG------------UCGUCG-UGGUgGUGgCGA- -5'
29476 3' -59.5 NC_006151.1 + 118318 0.67 0.696173
Target:  5'- aCUGCguGCccccgAGCAGCGCCGCgC-CCGCc -3'
miRNA:   3'- -GGUGguCG-----UCGUCGUGGUG-GuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 130581 0.67 0.696173
Target:  5'- gCAUCuggaggugguGCAGCGGCACCAgCGCCu-- -3'
miRNA:   3'- gGUGGu---------CGUCGUCGUGGUgGUGGcga -5'
29476 3' -59.5 NC_006151.1 + 6289 0.67 0.696173
Target:  5'- uCgGCC-GCGGCGGCgGCCGCCAggaGCUg -3'
miRNA:   3'- -GgUGGuCGUCGUCG-UGGUGGUgg-CGA- -5'
29476 3' -59.5 NC_006151.1 + 103495 0.67 0.696173
Target:  5'- gCGCCuGGUGGC-GCGCUACCGCgaGCUg -3'
miRNA:   3'- gGUGG-UCGUCGuCGUGGUGGUGg-CGA- -5'
29476 3' -59.5 NC_006151.1 + 130297 0.67 0.676183
Target:  5'- gCGCCGGCcgacggcgcggAGC-GCGCgCGCCGCgCGCUc -3'
miRNA:   3'- gGUGGUCG-----------UCGuCGUG-GUGGUG-GCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.