Results 101 - 120 of 472 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29476 | 3' | -59.5 | NC_006151.1 | + | 19625 | 0.67 | 0.66613 |
Target: 5'- gCCACCA----CGGCGCCGUCGCCGCg -3' miRNA: 3'- -GGUGGUcgucGUCGUGGUGGUGGCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 132038 | 0.67 | 0.676183 |
Target: 5'- -aGCCGGCGGCGcGCGgCAgCGCgGCg -3' miRNA: 3'- ggUGGUCGUCGU-CGUgGUgGUGgCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 136657 | 0.67 | 0.676183 |
Target: 5'- cUCGCCccucgGGgAGC-GCGCgGCCGCCGCc -3' miRNA: 3'- -GGUGG-----UCgUCGuCGUGgUGGUGGCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 37170 | 0.67 | 0.676183 |
Target: 5'- uCCGCCGGCGcccgccGCGGCcCCGCgGCC-CUc -3' miRNA: 3'- -GGUGGUCGU------CGUCGuGGUGgUGGcGA- -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 103495 | 0.67 | 0.696173 |
Target: 5'- gCGCCuGGUGGC-GCGCUACCGCgaGCUg -3' miRNA: 3'- gGUGG-UCGUCGuCGUGGUGGUGg-CGA- -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 6289 | 0.67 | 0.696173 |
Target: 5'- uCgGCC-GCGGCGGCgGCCGCCAggaGCUg -3' miRNA: 3'- -GgUGGuCGUCGUCG-UGGUGGUgg-CGA- -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 130581 | 0.67 | 0.696173 |
Target: 5'- gCAUCuggaggugguGCAGCGGCACCAgCGCCu-- -3' miRNA: 3'- gGUGGu---------CGUCGUCGUGGUgGUGGcga -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 118318 | 0.67 | 0.696173 |
Target: 5'- aCUGCguGCccccgAGCAGCGCCGCgC-CCGCc -3' miRNA: 3'- -GGUGguCG-----UCGUCGUGGUG-GuGGCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 70794 | 0.67 | 0.696173 |
Target: 5'- gCACCGGCguggccgucgugGGCAGCuACCGgCGCaGCUg -3' miRNA: 3'- gGUGGUCG------------UCGUCG-UGGUgGUGgCGA- -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 52001 | 0.67 | 0.696173 |
Target: 5'- -uGCCGGCGuGCAGC--UugCGCCGCg -3' miRNA: 3'- ggUGGUCGU-CGUCGugGugGUGGCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 65836 | 0.67 | 0.6862 |
Target: 5'- gCGCCAGC-GCGGCccggcucacGCCuCCuCCGCUc -3' miRNA: 3'- gGUGGUCGuCGUCG---------UGGuGGuGGCGA- -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 108089 | 0.67 | 0.6862 |
Target: 5'- uCCACCAuCcGCcGCgACCGCgGCCGCg -3' miRNA: 3'- -GGUGGUcGuCGuCG-UGGUGgUGGCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 91296 | 0.67 | 0.6862 |
Target: 5'- gCCGCguCAGCAGCcGCGCCgggaaGgCGCCGUa -3' miRNA: 3'- -GGUG--GUCGUCGuCGUGG-----UgGUGGCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 69983 | 0.67 | 0.6862 |
Target: 5'- gCugCAGCGGCGGCAgCGUCAgcaCGCUc -3' miRNA: 3'- gGugGUCGUCGUCGUgGUGGUg--GCGA- -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 138429 | 0.67 | 0.6862 |
Target: 5'- uUCGCUacaaagugcGGCAGCAacgcgacgcGCACCAuuuUCACCGCg -3' miRNA: 3'- -GGUGG---------UCGUCGU---------CGUGGU---GGUGGCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 11894 | 0.67 | 0.6852 |
Target: 5'- gCCGCaucgaGGCGcgucgggguuuucGCGcccucGCGCCGCCGCCGCc -3' miRNA: 3'- -GGUGg----UCGU-------------CGU-----CGUGGUGGUGGCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 3233 | 0.67 | 0.680194 |
Target: 5'- gCCGCauccaGGCGGCgcggcggcggagcggGGCGCCGCgGCgCGCg -3' miRNA: 3'- -GGUGg----UCGUCG---------------UCGUGGUGgUG-GCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 129158 | 0.67 | 0.677186 |
Target: 5'- aCACUGGCucucggccacgucgcGCAGgGCCGCCACgGCc -3' miRNA: 3'- gGUGGUCGu--------------CGUCgUGGUGGUGgCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 138337 | 0.67 | 0.676183 |
Target: 5'- cCCGgCAcGCGcGCAGC-CCGCCGgcCCGCa -3' miRNA: 3'- -GGUgGU-CGU-CGUCGuGGUGGU--GGCGa -5' |
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29476 | 3' | -59.5 | NC_006151.1 | + | 130297 | 0.67 | 0.676183 |
Target: 5'- gCGCCGGCcgacggcgcggAGC-GCGCgCGCCGCgCGCUc -3' miRNA: 3'- gGUGGUCG-----------UCGuCGUG-GUGGUG-GCGA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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