miRNA display CGI


Results 41 - 60 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 72326 0.76 0.220153
Target:  5'- gCCGCCGGuCAGCcauggccgcgAGCACguCGCCGCCGCa -3'
miRNA:   3'- -GGUGGUC-GUCG----------UCGUG--GUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 69464 0.76 0.236644
Target:  5'- gCCGCgGGCGcCGGCACCgucGCCGCCGCc -3'
miRNA:   3'- -GGUGgUCGUcGUCGUGG---UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 68764 0.76 0.214356
Target:  5'- -aGCCGGCGGUGGCGCgcgcggcgaggugCGCCGCCGCg -3'
miRNA:   3'- ggUGGUCGUCGUCGUG-------------GUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 134688 0.76 0.220153
Target:  5'- cCCGCCAccccGCGcgccccgauGCAGCACCGCC-CCGCg -3'
miRNA:   3'- -GGUGGU----CGU---------CGUCGUGGUGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 58733 0.76 0.214878
Target:  5'- gCCGCUcGCGucgcGCAGCGCCgcgGCCACCGCg -3'
miRNA:   3'- -GGUGGuCGU----CGUCGUGG---UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 122391 0.76 0.23048
Target:  5'- gCCGCgGGCgcgcgcuGGCGGCGCuCGCCGCCGUg -3'
miRNA:   3'- -GGUGgUCG-------UCGUCGUG-GUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 67807 0.76 0.236644
Target:  5'- gCACUcGCGGCAGCAgCUGCCGCCGUc -3'
miRNA:   3'- gGUGGuCGUCGUCGU-GGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 87426 0.76 0.225538
Target:  5'- cCCAgCCGGUGGCcguGCccGCCGCCGCCGCg -3'
miRNA:   3'- -GGU-GGUCGUCGu--CG--UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 132179 0.76 0.225538
Target:  5'- gCACCGGCgcgcccgacAGCAGCACCA-CGCCGUg -3'
miRNA:   3'- gGUGGUCG---------UCGUCGUGGUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 71771 0.76 0.220153
Target:  5'- uCCugCGGCAGCGGCGgCggggGCUGCCGCa -3'
miRNA:   3'- -GGugGUCGUCGUCGUgG----UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 99263 0.75 0.254158
Target:  5'- aCCGCgGGCuuCAcGCGCCGCCACUGCg -3'
miRNA:   3'- -GGUGgUCGucGU-CGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 109310 0.75 0.259616
Target:  5'- gCCGCCucggcGGCAGCAGCggcggcggcaacaACCACCACCa-- -3'
miRNA:   3'- -GGUGG-----UCGUCGUCG-------------UGGUGGUGGcga -5'
29476 3' -59.5 NC_006151.1 + 96397 0.75 0.266416
Target:  5'- -uGCCGGCGcaCGGCgGCCGCCACCGCg -3'
miRNA:   3'- ggUGGUCGUc-GUCG-UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 50582 0.75 0.25236
Target:  5'- gCAgCAGCAGCAGCaacaacagcagcggGCCccgcGCCGCCGCg -3'
miRNA:   3'- gGUgGUCGUCGUCG--------------UGG----UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 50440 0.75 0.254158
Target:  5'- gCGCCGGCGGCcugGGCACCGCCcgcgGgCGCUc -3'
miRNA:   3'- gGUGGUCGUCG---UCGUGGUGG----UgGCGA- -5'
29476 3' -59.5 NC_006151.1 + 75265 0.75 0.266416
Target:  5'- uCCGCgGGCuccuggcGCAGCGCCGCCAgCGUg -3'
miRNA:   3'- -GGUGgUCGu------CGUCGUGGUGGUgGCGa -5'
29476 3' -59.5 NC_006151.1 + 85151 0.75 0.272722
Target:  5'- aCCGCguGCGGCAGgggGCCGgCGCCGCg -3'
miRNA:   3'- -GGUGguCGUCGUCg--UGGUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 73380 0.75 0.266416
Target:  5'- gUCACgggGGCGcGCAGCGCgGCCGCCGCg -3'
miRNA:   3'- -GGUGg--UCGU-CGUCGUGgUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 53395 0.75 0.242367
Target:  5'- gCCACCAGCAGUAG-ACgACgGCCGUg -3'
miRNA:   3'- -GGUGGUCGUCGUCgUGgUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 101850 0.75 0.242367
Target:  5'- cCCGCCccGGCacccGGCGGCgcaccgcucccGCCGCCGCCGCg -3'
miRNA:   3'- -GGUGG--UCG----UCGUCG-----------UGGUGGUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.