miRNA display CGI


Results 61 - 80 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 50809 0.75 0.272722
Target:  5'- cCCGCCAGC-GCAGCGuCCACgccucggcccgCGCCGCc -3'
miRNA:   3'- -GGUGGUCGuCGUCGU-GGUG-----------GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 85151 0.75 0.272722
Target:  5'- aCCGCguGCGGCAGgggGCCGgCGCCGCg -3'
miRNA:   3'- -GGUGguCGUCGUCg--UGGUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 113101 0.74 0.285693
Target:  5'- gCCACCGGgGGCGGgGCCGCggacgcggaCGCCGCc -3'
miRNA:   3'- -GGUGGUCgUCGUCgUGGUG---------GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 126190 0.74 0.285693
Target:  5'- cCUACCGGCA-CAucucGCGCCugCGCCGCa -3'
miRNA:   3'- -GGUGGUCGUcGU----CGUGGugGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 95203 0.74 0.285693
Target:  5'- gCCGaugcCCAGCgAGCGGCugCGCCGCaCGCc -3'
miRNA:   3'- -GGU----GGUCG-UCGUCGugGUGGUG-GCGa -5'
29476 3' -59.5 NC_006151.1 + 128966 0.74 0.285693
Target:  5'- gCGCCAGUAGguG-GCCAgCACCGCg -3'
miRNA:   3'- gGUGGUCGUCguCgUGGUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 85946 0.74 0.292359
Target:  5'- gCugCAGCAGCcGCACCugCGCaaCGCg -3'
miRNA:   3'- gGugGUCGUCGuCGUGGugGUG--GCGa -5'
29476 3' -59.5 NC_006151.1 + 104962 0.74 0.292359
Target:  5'- aCCugCuGCGGguGaCGCCGCCGCCGg- -3'
miRNA:   3'- -GGugGuCGUCguC-GUGGUGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 74749 0.74 0.297779
Target:  5'- gCGCCAGUAGCucuggaugcacuGCGCCACgaGCCGCg -3'
miRNA:   3'- gGUGGUCGUCGu-----------CGUGGUGg-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 38996 0.74 0.298461
Target:  5'- aUCGCCGcGCGccGCGGCGCCccgcuccGCCGCCGCg -3'
miRNA:   3'- -GGUGGU-CGU--CGUCGUGG-------UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 127857 0.74 0.299146
Target:  5'- gCGCCGGaGGgGGCGCCGCCcGCCGCc -3'
miRNA:   3'- gGUGGUCgUCgUCGUGGUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 116299 0.74 0.299146
Target:  5'- uCCugCAcGCAGUAGCGCCcgaugaCGCCGCg -3'
miRNA:   3'- -GGugGU-CGUCGUCGUGGug----GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 137406 0.74 0.299146
Target:  5'- cCCGCCgGGgGGCGcccuCGCCGCCGCCGCg -3'
miRNA:   3'- -GGUGG-UCgUCGUc---GUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 36903 0.74 0.299146
Target:  5'- cCCGCCGGC-GCcGCGCCGgagaggcgcccuCCGCCGCg -3'
miRNA:   3'- -GGUGGUCGuCGuCGUGGU------------GGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 31761 0.74 0.301894
Target:  5'- gCCugCGGCggcgggcgcgcgccgGGCGGCucuccuccuucACCGCCGCCGCg -3'
miRNA:   3'- -GGugGUCG---------------UCGUCG-----------UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 15888 0.74 0.301894
Target:  5'- cCCGCCGGgGgacgcgcgccccgacGCGGC-CCGCCGCCGCc -3'
miRNA:   3'- -GGUGGUCgU---------------CGUCGuGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 19398 0.74 0.306054
Target:  5'- cCCGCCGGacgguCAGguGCgGCgACCACCGCUc -3'
miRNA:   3'- -GGUGGUC-----GUCguCG-UGgUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 105227 0.74 0.306054
Target:  5'- gCugCGGCAGCGGCugACgGCCGCCGa- -3'
miRNA:   3'- gGugGUCGUCGUCG--UGgUGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 3089 0.74 0.306054
Target:  5'- -aGgCGGCgAGCAGCGCCgagagGCCGCCGCg -3'
miRNA:   3'- ggUgGUCG-UCGUCGUGG-----UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 114443 0.74 0.306054
Target:  5'- aCCGCCuGCucggGGCcuGCGCCgGCCACCGCa -3'
miRNA:   3'- -GGUGGuCG----UCGu-CGUGG-UGGUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.