miRNA display CGI


Results 81 - 100 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 32236 0.74 0.306054
Target:  5'- uCCucCUGGCcGCGGCgACCGCCGCCGCc -3'
miRNA:   3'- -GGu-GGUCGuCGUCG-UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 74843 0.74 0.312375
Target:  5'- aCCAUgGGUAGUuggcgucgcggaaGGCGCCGCgCACCGCg -3'
miRNA:   3'- -GGUGgUCGUCG-------------UCGUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 119540 0.74 0.313083
Target:  5'- cCCGCCuGCGcGCAcacaacccuGCACCGCCugCGCc -3'
miRNA:   3'- -GGUGGuCGU-CGU---------CGUGGUGGugGCGa -5'
29476 3' -59.5 NC_006151.1 + 118901 0.73 0.320235
Target:  5'- gCCGCCGGCGGCcucgAGCGCCGCauggcguCCGUc -3'
miRNA:   3'- -GGUGGUCGUCG----UCGUGGUGgu-----GGCGa -5'
29476 3' -59.5 NC_006151.1 + 67975 0.73 0.320235
Target:  5'- aCCACgCAgucGCGGCGGC-CCGCCggcGCCGCg -3'
miRNA:   3'- -GGUG-GU---CGUCGUCGuGGUGG---UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 85595 0.73 0.325313
Target:  5'- aCUuCCAGCucGGCGcgcucgugcccaacGCGCCGCCGCCGCg -3'
miRNA:   3'- -GGuGGUCG--UCGU--------------CGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 5695 0.73 0.327508
Target:  5'- -uGCCGGC-GCuGCgGCCACCGCUGCUg -3'
miRNA:   3'- ggUGGUCGuCGuCG-UGGUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 142911 0.73 0.327508
Target:  5'- gCCACCGGC-GCgGGCACCGaCACCGUc -3'
miRNA:   3'- -GGUGGUCGuCG-UCGUGGUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 59842 0.73 0.33193
Target:  5'- gCCACCGGCcgguccggggggcGCAGCuGCCGCagCACCGCUg -3'
miRNA:   3'- -GGUGGUCGu------------CGUCG-UGGUG--GUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 10491 0.73 0.334903
Target:  5'- gCCGcCCGGC-GCGcGC-CCGCCGCCGCa -3'
miRNA:   3'- -GGU-GGUCGuCGU-CGuGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 35960 0.73 0.334903
Target:  5'- -aGCCAGCuccuGGCGGcCGCCGCCGCgGCc -3'
miRNA:   3'- ggUGGUCG----UCGUC-GUGGUGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 47269 0.73 0.334903
Target:  5'- aCCGcuCCGGCGcGCAGCGuCCGCgGCUGCUg -3'
miRNA:   3'- -GGU--GGUCGU-CGUCGU-GGUGgUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 53479 0.73 0.340151
Target:  5'- aCGCCGGCAGCgAGCcguggcacgcgaagGCCAggugcuCCGCCGCg -3'
miRNA:   3'- gGUGGUCGUCG-UCG--------------UGGU------GGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 57514 0.73 0.350056
Target:  5'- gCCG-CGGCGGCGGCgGCCGCCuccggcgcgGCCGCg -3'
miRNA:   3'- -GGUgGUCGUCGUCG-UGGUGG---------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 36558 0.73 0.350056
Target:  5'- -aGCCAGCAgcgguggccGCAGCGCCGgCACgGCg -3'
miRNA:   3'- ggUGGUCGU---------CGUCGUGGUgGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 39801 0.73 0.357813
Target:  5'- aCCGCUGGgGGCucGGCGCC-CCGCUGCg -3'
miRNA:   3'- -GGUGGUCgUCG--UCGUGGuGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 19289 0.73 0.357813
Target:  5'- cCCACCGGggcCAGCGGCGCgGgcggccggucgcCCACCGCc -3'
miRNA:   3'- -GGUGGUC---GUCGUCGUGgU------------GGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 64741 0.73 0.357813
Target:  5'- gCCACgAGCucgAGCAGCGggGCCACCGUg -3'
miRNA:   3'- -GGUGgUCG---UCGUCGUggUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 86061 0.72 0.36569
Target:  5'- gCCGCCugAGCccGCAgucuccgcgcgcGCGCCGCCGCCGCc -3'
miRNA:   3'- -GGUGG--UCGu-CGU------------CGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 102882 0.72 0.36569
Target:  5'- aCGCC-GCGGUGGCggGCCugCGCCGCc -3'
miRNA:   3'- gGUGGuCGUCGUCG--UGGugGUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.