miRNA display CGI


Results 101 - 120 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 36687 0.72 0.36569
Target:  5'- aUCACCAGCaccgcgAGCcccugcucgacgAGC-CCGCCGCCGCg -3'
miRNA:   3'- -GGUGGUCG------UCG------------UCGuGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 86061 0.72 0.36569
Target:  5'- gCCGCCugAGCccGCAgucuccgcgcgcGCGCCGCCGCCGCc -3'
miRNA:   3'- -GGUGG--UCGu-CGU------------CGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 75523 0.72 0.373686
Target:  5'- cCCACCAGCGGguaCGGCACCugCGUgGCc -3'
miRNA:   3'- -GGUGGUCGUC---GUCGUGGugGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 83054 0.72 0.373686
Target:  5'- gCAgCGGCAGCAGCuugGCCACgAgCGCg -3'
miRNA:   3'- gGUgGUCGUCGUCG---UGGUGgUgGCGa -5'
29476 3' -59.5 NC_006151.1 + 112412 0.72 0.373686
Target:  5'- aUCGCCGcGCGcagaucgaccGCcGCGCCGCCGCCGCc -3'
miRNA:   3'- -GGUGGU-CGU----------CGuCGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 107593 0.72 0.373686
Target:  5'- gCCGCCaAGCuGGCcccgccGGCGCCGCCGcCCGCc -3'
miRNA:   3'- -GGUGG-UCG-UCG------UCGUGGUGGU-GGCGa -5'
29476 3' -59.5 NC_006151.1 + 128611 0.72 0.3818
Target:  5'- gCCACCcGCGGCGuGCGCCccagguggcggACCACgCGCg -3'
miRNA:   3'- -GGUGGuCGUCGU-CGUGG-----------UGGUG-GCGa -5'
29476 3' -59.5 NC_006151.1 + 117415 0.72 0.3818
Target:  5'- gCC-CCAGCAGCGugACCACCguGCCGUUg -3'
miRNA:   3'- -GGuGGUCGUCGUcgUGGUGG--UGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 121085 0.72 0.3818
Target:  5'- -gACgGGCGGCGGCGCCgggcugcacgACCACuCGCUc -3'
miRNA:   3'- ggUGgUCGUCGUCGUGG----------UGGUG-GCGA- -5'
29476 3' -59.5 NC_006151.1 + 17485 0.72 0.3818
Target:  5'- cUCGUCGGCGGC-GCGCCGCUGCUGCa -3'
miRNA:   3'- -GGUGGUCGUCGuCGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 64903 0.72 0.39003
Target:  5'- gCACgCAGCGGCgcgcgAGCACCuCCACgGCg -3'
miRNA:   3'- gGUG-GUCGUCG-----UCGUGGuGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 71317 0.72 0.39003
Target:  5'- uUCACCGGCAagcGCGGCGgCugCGCCGaCg -3'
miRNA:   3'- -GGUGGUCGU---CGUCGUgGugGUGGC-Ga -5'
29476 3' -59.5 NC_006151.1 + 19887 0.72 0.39003
Target:  5'- gCGCCAGggcCAGCAGCGCCAggaGCUGCg -3'
miRNA:   3'- gGUGGUC---GUCGUCGUGGUgg-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 85657 0.72 0.39003
Target:  5'- cCCGCCucgcGCAGCGGCGacggcaACCugCGCUu -3'
miRNA:   3'- -GGUGGu---CGUCGUCGUgg----UGGugGCGA- -5'
29476 3' -59.5 NC_006151.1 + 20745 0.72 0.39003
Target:  5'- ---aCAGCAGCcggcGCGCCuCCACCGCg -3'
miRNA:   3'- ggugGUCGUCGu---CGUGGuGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 24375 0.72 0.392522
Target:  5'- cCCGCCGGUgaucgucuugggguaGGCcagcgucucgaagAGCACCACCcCCGCg -3'
miRNA:   3'- -GGUGGUCG---------------UCG-------------UCGUGGUGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 104596 0.72 0.398376
Target:  5'- gCCGgCGGCAGCcgcGGCGCCGagauCUGCCGCg -3'
miRNA:   3'- -GGUgGUCGUCG---UCGUGGU----GGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 96479 0.72 0.398376
Target:  5'- uCCGCaCGcGCAGguGCACCAgCuuGCCGCa -3'
miRNA:   3'- -GGUG-GU-CGUCguCGUGGUgG--UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 82649 0.72 0.398376
Target:  5'- cCCugCGGCgagGGCGGC-CCACCcugcggcgcGCCGCg -3'
miRNA:   3'- -GGugGUCG---UCGUCGuGGUGG---------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 64501 0.72 0.398376
Target:  5'- gCGCgGGCGGCGggcgcGCGCCGCCaaagGCCGCc -3'
miRNA:   3'- gGUGgUCGUCGU-----CGUGGUGG----UGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.