miRNA display CGI


Results 61 - 80 of 472 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 115205 0.66 0.724768
Target:  5'- gCCGCgGGCGcGCGcGCgaucgugGCCGCUGCCGCc -3'
miRNA:   3'- -GGUGgUCGU-CGU-CG-------UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 130427 0.66 0.724768
Target:  5'- gCGCCGaccgucgaggacuGCAGCGGCGCCAgaaaCAUgGCg -3'
miRNA:   3'- gGUGGU-------------CGUCGUCGUGGUg---GUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 69642 0.66 0.722815
Target:  5'- cCCGC--GCGuGCGGCGCCGCCGggucgucgaagcccCCGCg -3'
miRNA:   3'- -GGUGguCGU-CGUCGUGGUGGU--------------GGCGa -5'
29476 3' -59.5 NC_006151.1 + 2777 0.66 0.715954
Target:  5'- gCCGCgCGGagcucGCGGCACCcggGCCAgCGCa -3'
miRNA:   3'- -GGUG-GUCgu---CGUCGUGG---UGGUgGCGa -5'
29476 3' -59.5 NC_006151.1 + 67904 0.66 0.715954
Target:  5'- gCGCCAGCAGCcucGGguCCAUCugCa-- -3'
miRNA:   3'- gGUGGUCGUCG---UCguGGUGGugGcga -5'
29476 3' -59.5 NC_006151.1 + 71988 0.66 0.715954
Target:  5'- -gGgCAGCuGGUAGCGCCGgCCGuuGCUg -3'
miRNA:   3'- ggUgGUCG-UCGUCGUGGU-GGUggCGA- -5'
29476 3' -59.5 NC_006151.1 + 83761 0.66 0.715954
Target:  5'- gCCAUCGGCucgGGCacguacAGCGCC-CCGCCGa- -3'
miRNA:   3'- -GGUGGUCG---UCG------UCGUGGuGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 140206 0.66 0.715954
Target:  5'- gCCACCgcGGgGGCGGUGCUgcagaACCugCGCc -3'
miRNA:   3'- -GGUGG--UCgUCGUCGUGG-----UGGugGCGa -5'
29476 3' -59.5 NC_006151.1 + 18688 0.66 0.715954
Target:  5'- uCCACgGGCgcgcgGGCGGCGCCGgCGUCGUg -3'
miRNA:   3'- -GGUGgUCG-----UCGUCGUGGUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 90367 0.66 0.715954
Target:  5'- aCGCCG--AGCAGCAUCGucgaCGCCGCg -3'
miRNA:   3'- gGUGGUcgUCGUCGUGGUg---GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 112966 0.66 0.715954
Target:  5'- uUCACCguGGCGGaCGcGCGCgCGCCGCCGa- -3'
miRNA:   3'- -GGUGG--UCGUC-GU-CGUG-GUGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 124500 0.66 0.715954
Target:  5'- gCACCcGCGGCuGGCA-CACCACCa-- -3'
miRNA:   3'- gGUGGuCGUCG-UCGUgGUGGUGGcga -5'
29476 3' -59.5 NC_006151.1 + 37006 0.66 0.715954
Target:  5'- uCCGCCccccgGGCcccCGCCGCCGCCGCg -3'
miRNA:   3'- -GGUGGucg--UCGuc-GUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 137656 0.66 0.715954
Target:  5'- cCCGucCCGGCGGacgAGCGCCcgccgugcgGCUGCCGCg -3'
miRNA:   3'- -GGU--GGUCGUCg--UCGUGG---------UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 136987 0.66 0.715954
Target:  5'- nCGCCGGgCGGCgGGCGCgCGCgCACgGCg -3'
miRNA:   3'- gGUGGUC-GUCG-UCGUG-GUG-GUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 68262 0.66 0.706094
Target:  5'- gCGCgCGGCGacggucGCGGCGCCgggcGCCACgGCg -3'
miRNA:   3'- gGUG-GUCGU------CGUCGUGG----UGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 101291 0.66 0.706094
Target:  5'- gCGCgGGCGGCGcCGCgCugCACUGCg -3'
miRNA:   3'- gGUGgUCGUCGUcGUG-GugGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 102223 0.66 0.706094
Target:  5'- cCCACgGGgaGGCGccguGCGCCGUCGCCGCg -3'
miRNA:   3'- -GGUGgUCg-UCGU----CGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 106629 0.66 0.706094
Target:  5'- aCGCC-GCGGUcaccgAGCGCCuggaCGCCGCg -3'
miRNA:   3'- gGUGGuCGUCG-----UCGUGGug--GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 55364 0.66 0.706094
Target:  5'- uCCGCgAGCAGguGCGCgAgCGCgaGCa -3'
miRNA:   3'- -GGUGgUCGUCguCGUGgUgGUGg-CGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.