miRNA display CGI


Results 61 - 80 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 24523 0.66 0.745079
Target:  5'- gCCGCCAcguuGCAGC-GCGCgGCC-CCGa- -3'
miRNA:   3'- -GGUGGU----CGUCGuCGUGgUGGuGGCga -5'
29476 3' -59.5 NC_006151.1 + 24832 0.68 0.609569
Target:  5'- uCCAUCAGCgucgagGGCuucuggcccaccuucAGCACCACCGuguCCGCc -3'
miRNA:   3'- -GGUGGUCG------UCG---------------UCGUGGUGGU---GGCGa -5'
29476 3' -59.5 NC_006151.1 + 25404 0.67 0.645954
Target:  5'- aCCGCgA-CGGgGGCGCCGCCGCCccacGCg -3'
miRNA:   3'- -GGUGgUcGUCgUCGUGGUGGUGG----CGa -5'
29476 3' -59.5 NC_006151.1 + 31761 0.74 0.301894
Target:  5'- gCCugCGGCggcgggcgcgcgccgGGCGGCucuccuccuucACCGCCGCCGCg -3'
miRNA:   3'- -GGugGUCG---------------UCGUCG-----------UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 31832 0.7 0.467205
Target:  5'- cCCGCCGGCcucggcccacccGCGGCGUCACC-CCGCUc -3'
miRNA:   3'- -GGUGGUCGu-----------CGUCGUGGUGGuGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 32051 0.71 0.424086
Target:  5'- gCCGCCucuGCAGC--CGCCGCCcgcGCCGCg -3'
miRNA:   3'- -GGUGGu--CGUCGucGUGGUGG---UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 32236 0.74 0.306054
Target:  5'- uCCucCUGGCcGCGGCgACCGCCGCCGCc -3'
miRNA:   3'- -GGu-GGUCGuCGUCG-UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 33610 0.7 0.497172
Target:  5'- aUCGCCAGUAaCAcccGCACCACCGacacCCGCa -3'
miRNA:   3'- -GGUGGUCGUcGU---CGUGGUGGU----GGCGa -5'
29476 3' -59.5 NC_006151.1 + 35960 0.73 0.334903
Target:  5'- -aGCCAGCuccuGGCGGcCGCCGCCGCgGCc -3'
miRNA:   3'- ggUGGUCG----UCGUC-GUGGUGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 36014 0.69 0.545607
Target:  5'- cCCGaCGGCGGCAGCcagggcucCCGgCGCCGCg -3'
miRNA:   3'- -GGUgGUCGUCGUCGu-------GGUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 36171 0.79 0.148009
Target:  5'- cCCAgCAGCAGCAGCAgCC-CCGCCGg- -3'
miRNA:   3'- -GGUgGUCGUCGUCGU-GGuGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 36352 0.66 0.754607
Target:  5'- gCCGCCGacccCGGCAGCACuCGCaGCgGCa -3'
miRNA:   3'- -GGUGGUc---GUCGUCGUG-GUGgUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 36519 0.68 0.609569
Target:  5'- -gGCCGGCGGCgcggccucggaccccGGCGCCACCAgCa-- -3'
miRNA:   3'- ggUGGUCGUCG---------------UCGUGGUGGUgGcga -5'
29476 3' -59.5 NC_006151.1 + 36558 0.73 0.350056
Target:  5'- -aGCCAGCAgcgguggccGCAGCGCCGgCACgGCg -3'
miRNA:   3'- ggUGGUCGU---------CGUCGUGGUgGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 36638 0.78 0.176477
Target:  5'- cCCGgCGGCGGCGGCGCCcCCuCCGCc -3'
miRNA:   3'- -GGUgGUCGUCGUCGUGGuGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 36687 0.72 0.36569
Target:  5'- aUCACCAGCaccgcgAGCcccugcucgacgAGC-CCGCCGCCGCg -3'
miRNA:   3'- -GGUGGUCG------UCG------------UCGuGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 36903 0.74 0.299146
Target:  5'- cCCGCCGGC-GCcGCGCCGgagaggcgcccuCCGCCGCg -3'
miRNA:   3'- -GGUGGUCGuCGuCGUGGU------------GGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 36958 0.69 0.549552
Target:  5'- uCCAgCAGCAGCGGCAgcgacucggaccucuCC-CCGgcCCGCUc -3'
miRNA:   3'- -GGUgGUCGUCGUCGU---------------GGuGGU--GGCGA- -5'
29476 3' -59.5 NC_006151.1 + 37006 0.66 0.715954
Target:  5'- uCCGCCccccgGGCcccCGCCGCCGCCGCg -3'
miRNA:   3'- -GGUGGucg--UCGuc-GUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 37144 0.67 0.676183
Target:  5'- cUCGCCcGC-GCcGgGCCGCCACCGUc -3'
miRNA:   3'- -GGUGGuCGuCGuCgUGGUGGUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.