miRNA display CGI


Results 81 - 100 of 472 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 37170 0.67 0.676183
Target:  5'- uCCGCCGGCGcccgccGCGGCcCCGCgGCC-CUc -3'
miRNA:   3'- -GGUGGUCGU------CGUCGuGGUGgUGGcGA- -5'
29476 3' -59.5 NC_006151.1 + 37400 0.67 0.645954
Target:  5'- uCCGCUA-CGGCGGCGCCggggACUcCCGCg -3'
miRNA:   3'- -GGUGGUcGUCGUCGUGG----UGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 37454 0.79 0.148009
Target:  5'- uCCGCCAgGCcGCGGC-CCGCUACCGCg -3'
miRNA:   3'- -GGUGGU-CGuCGUCGuGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 37684 0.79 0.140678
Target:  5'- aUCACCGGCAGCGugACC-CCGCCGCUg -3'
miRNA:   3'- -GGUGGUCGUCGUcgUGGuGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 37755 0.7 0.478336
Target:  5'- cCUGCCGcacGCGGUgAGCGCCguggccaugaGCCGCCGCUa -3'
miRNA:   3'- -GGUGGU---CGUCG-UCGUGG----------UGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 37960 0.67 0.66613
Target:  5'- cCCGCgAGCuGGCGGaCGCCugCguccuggccuGCCGCg -3'
miRNA:   3'- -GGUGgUCG-UCGUC-GUGGugG----------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 38388 0.69 0.555486
Target:  5'- gCGCCGGCGGCGGCgggcGCCcCCuCCGg- -3'
miRNA:   3'- gGUGGUCGUCGUCG----UGGuGGuGGCga -5'
29476 3' -59.5 NC_006151.1 + 38550 0.66 0.706094
Target:  5'- gCGCCcgAGCGGCgcaagaagaAGCGCCGcgcgcccggggcCCGCCGCc -3'
miRNA:   3'- gGUGG--UCGUCG---------UCGUGGU------------GGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 38641 0.66 0.754607
Target:  5'- uCCGCgGGgA-CGGcCACgGCCACCGCg -3'
miRNA:   3'- -GGUGgUCgUcGUC-GUGgUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 38996 0.74 0.298461
Target:  5'- aUCGCCGcGCGccGCGGCGCCccgcuccGCCGCCGCg -3'
miRNA:   3'- -GGUGGU-CGU--CGUCGUGG-------UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 39099 0.66 0.725744
Target:  5'- cCCACgAGgAGCucuGCGCCGagcCCGCCGa- -3'
miRNA:   3'- -GGUGgUCgUCGu--CGUGGU---GGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 39157 0.69 0.535785
Target:  5'- gCGCCgcGGCGGCcucucGGCGCUGCuCGCCGCc -3'
miRNA:   3'- gGUGG--UCGUCG-----UCGUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 39567 0.66 0.725744
Target:  5'- cCCGCCuGCAcccCGGgGCCgaGCCGCUGCg -3'
miRNA:   3'- -GGUGGuCGUc--GUCgUGG--UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 39681 0.72 0.406835
Target:  5'- aCCGCCAGC-GCGuGCuCC-CCACCGUg -3'
miRNA:   3'- -GGUGGUCGuCGU-CGuGGuGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 39801 0.73 0.357813
Target:  5'- aCCGCUGGgGGCucGGCGCC-CCGCUGCg -3'
miRNA:   3'- -GGUGGUCgUCG--UCGUGGuGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 39943 0.69 0.565417
Target:  5'- gCCGCCccgcuGguGCugaccccgGGCGCCgucGCCGCCGCg -3'
miRNA:   3'- -GGUGGu----CguCG--------UCGUGG---UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 40026 0.72 0.406835
Target:  5'- -gACCAGCGuCcGCGCCGCCGCCGg- -3'
miRNA:   3'- ggUGGUCGUcGuCGUGGUGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 42560 0.66 0.741241
Target:  5'- cCCGCCAccccccucucCGGCGCCACgCGCCGCc -3'
miRNA:   3'- -GGUGGUcguc------GUCGUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 43056 0.69 0.526025
Target:  5'- aCCGCCGucGCcacCAuCGCCACCGCCGCg -3'
miRNA:   3'- -GGUGGU--CGuc-GUcGUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 44686 0.67 0.656051
Target:  5'- gCgGCCGGCGGCugaccGUACCAUCuGCUGCc -3'
miRNA:   3'- -GgUGGUCGUCGu----CGUGGUGG-UGGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.