miRNA display CGI


Results 101 - 120 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 45777 0.7 0.487711
Target:  5'- aCCGCCc-CAGaAGCcccucGCCACCGCCGCa -3'
miRNA:   3'- -GGUGGucGUCgUCG-----UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 45911 0.67 0.645954
Target:  5'- gCAuCCAGC-GCuggacccugacgAGCACCGCCugcCCGCUg -3'
miRNA:   3'- gGU-GGUCGuCG------------UCGUGGUGGu--GGCGA- -5'
29476 3' -59.5 NC_006151.1 + 46734 0.68 0.625734
Target:  5'- -gGCCGGCccggGGuCGGCgaaCACCGCCGCUu -3'
miRNA:   3'- ggUGGUCG----UC-GUCGug-GUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 46966 0.71 0.432874
Target:  5'- cCCugUuGCuGCuGCgGCCGCCGCCGCUc -3'
miRNA:   3'- -GGugGuCGuCGuCG-UGGUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 47269 0.73 0.334903
Target:  5'- aCCGcuCCGGCGcGCAGCGuCCGCgGCUGCUg -3'
miRNA:   3'- -GGU--GGUCGU-CGUCGU-GGUGgUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 48586 0.72 0.405984
Target:  5'- gCCGCCcgGGguGCGccucgucgugccuGcCGCCGCCGCCGCUu -3'
miRNA:   3'- -GGUGG--UCguCGU-------------C-GUGGUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 48647 0.77 0.1997
Target:  5'- aCCGCCGcuGCAGCAGCAgCCcCCGCCGg- -3'
miRNA:   3'- -GGUGGU--CGUCGUCGU-GGuGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 48895 0.71 0.459859
Target:  5'- gCGCCuGCgcuGGCcgAGUACCGCgGCCGCUg -3'
miRNA:   3'- gGUGGuCG---UCG--UCGUGGUGgUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 50160 0.66 0.735456
Target:  5'- cCCgACgAGCGGacgAGCGCgGCCgGCCGCg -3'
miRNA:   3'- -GG-UGgUCGUCg--UCGUGgUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 50342 0.67 0.656051
Target:  5'- gCGCCuGGCcGCGGC-CUcCCGCCGCg -3'
miRNA:   3'- gGUGG-UCGuCGUCGuGGuGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 50370 0.68 0.605533
Target:  5'- uCCGCCGGCGGgGGCGagaCgcggGCC-CCGCg -3'
miRNA:   3'- -GGUGGUCGUCgUCGUg--G----UGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 50440 0.75 0.254158
Target:  5'- gCGCCGGCGGCcugGGCACCGCCcgcgGgCGCUc -3'
miRNA:   3'- gGUGGUCGUCG---UCGUGGUGG----UgGCGA- -5'
29476 3' -59.5 NC_006151.1 + 50474 0.71 0.441768
Target:  5'- gCGCCAGC-GCGGCGCgACCgaGCCGg- -3'
miRNA:   3'- gGUGGUCGuCGUCGUGgUGG--UGGCga -5'
29476 3' -59.5 NC_006151.1 + 50539 1.09 0.001201
Target:  5'- aCCACCAGCAGCAGCACCACCACCGCUc -3'
miRNA:   3'- -GGUGGUCGUCGUCGUGGUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 50582 0.75 0.25236
Target:  5'- gCAgCAGCAGCAGCaacaacagcagcggGCCccgcGCCGCCGCg -3'
miRNA:   3'- gGUgGUCGUCGUCG--------------UGG----UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 50689 0.7 0.478336
Target:  5'- gCCGCC-GCGGCAGCGuCCACgCcucggcgacgGCCGCc -3'
miRNA:   3'- -GGUGGuCGUCGUCGU-GGUG-G----------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 50809 0.75 0.272722
Target:  5'- cCCGCCAGC-GCAGCGuCCACgccucggcccgCGCCGCc -3'
miRNA:   3'- -GGUGGUCGuCGUCGU-GGUG-----------GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 51942 0.69 0.526025
Target:  5'- gCCGCUcuGGUcgcGCAGCACCACgCGCgGCg -3'
miRNA:   3'- -GGUGG--UCGu--CGUCGUGGUG-GUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 52001 0.67 0.696173
Target:  5'- -uGCCGGCGuGCAGC--UugCGCCGCg -3'
miRNA:   3'- ggUGGUCGU-CGUCGugGugGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 52066 0.68 0.619669
Target:  5'- cCCACgAGCGuguagcuguccgucuGCAGCGCCgucgagagcaGCgCGCCGCg -3'
miRNA:   3'- -GGUGgUCGU---------------CGUCGUGG----------UG-GUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.