miRNA display CGI


Results 21 - 40 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 136929 0.7 0.497172
Target:  5'- gCAgCAGCAGCcgggcgccgacGGCGCCGuCCugCGCc -3'
miRNA:   3'- gGUgGUCGUCG-----------UCGUGGU-GGugGCGa -5'
29476 3' -59.5 NC_006151.1 + 136849 0.7 0.497172
Target:  5'- gCCGCCGGCcucGC-GCGCCgcgugACCGCCGUc -3'
miRNA:   3'- -GGUGGUCGu--CGuCGUGG-----UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 136657 0.67 0.676183
Target:  5'- cUCGCCccucgGGgAGC-GCGCgGCCGCCGCc -3'
miRNA:   3'- -GGUGG-----UCgUCGuCGUGgUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 136425 0.75 0.272722
Target:  5'- gCC-CC-GCGGCGGCGCaCGCCGCgCGCUa -3'
miRNA:   3'- -GGuGGuCGUCGUCGUG-GUGGUG-GCGA- -5'
29476 3' -59.5 NC_006151.1 + 136038 0.66 0.735456
Target:  5'- uCCuCgAGCAGguGCGCCcGCgCACCGg- -3'
miRNA:   3'- -GGuGgUCGUCguCGUGG-UG-GUGGCga -5'
29476 3' -59.5 NC_006151.1 + 135914 0.68 0.615627
Target:  5'- aCC-CCGGCGGUcguGCGCgCGCUcuGCCGCg -3'
miRNA:   3'- -GGuGGUCGUCGu--CGUG-GUGG--UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 135882 0.69 0.575393
Target:  5'- uCCGCguGCGGCccguGUucgUCGCCGCCGCg -3'
miRNA:   3'- -GGUGguCGUCGu---CGu--GGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 135617 0.68 0.595458
Target:  5'- cCCACgGccGCGGCGcccGCACCACCcggagaagauGCCGCc -3'
miRNA:   3'- -GGUGgU--CGUCGU---CGUGGUGG----------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 135315 0.66 0.754607
Target:  5'- aCCGagagguaCAGguGCaugAGCGCCGCCAggcacguguCCGCg -3'
miRNA:   3'- -GGUg------GUCguCG---UCGUGGUGGU---------GGCGa -5'
29476 3' -59.5 NC_006151.1 + 135153 0.67 0.642922
Target:  5'- cCCAgcCCGGCGggcGCGGCccggacgggcgccgGCUGCCGCCGCc -3'
miRNA:   3'- -GGU--GGUCGU---CGUCG--------------UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 134688 0.76 0.220153
Target:  5'- cCCGCCAccccGCGcgccccgauGCAGCACCGCC-CCGCg -3'
miRNA:   3'- -GGUGGU----CGU---------CGUCGUGGUGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 134013 0.66 0.725744
Target:  5'- gCCACCAGCGcGCagAGCGCgGCgACgaGCg -3'
miRNA:   3'- -GGUGGUCGU-CG--UCGUGgUGgUGg-CGa -5'
29476 3' -59.5 NC_006151.1 + 133086 0.69 0.564422
Target:  5'- aCCACCgcggccugcaggaAGCGGUcgAGCGCCGCguCCGUc -3'
miRNA:   3'- -GGUGG-------------UCGUCG--UCGUGGUGguGGCGa -5'
29476 3' -59.5 NC_006151.1 + 132849 0.68 0.595458
Target:  5'- aCCACgGGCGGcCGGC-CCGggGCCGCg -3'
miRNA:   3'- -GGUGgUCGUC-GUCGuGGUggUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 132512 0.66 0.739316
Target:  5'- gCGCCcGCAGCGuggacacgaagaagcGCuCCACgGCCGCc -3'
miRNA:   3'- gGUGGuCGUCGU---------------CGuGGUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 132179 0.76 0.225538
Target:  5'- gCACCGGCgcgcccgacAGCAGCACCA-CGCCGUg -3'
miRNA:   3'- gGUGGUCG---------UCGUCGUGGUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 132141 0.68 0.594452
Target:  5'- gCGCCGGCGGUgguugacGGCGCgCAgCugCGCg -3'
miRNA:   3'- gGUGGUCGUCG-------UCGUG-GUgGugGCGa -5'
29476 3' -59.5 NC_006151.1 + 132038 0.67 0.676183
Target:  5'- -aGCCGGCGGCGcGCGgCAgCGCgGCg -3'
miRNA:   3'- ggUGGUCGUCGU-CGUgGUgGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 131913 0.66 0.725744
Target:  5'- -gGgCGGCAGCAGgGCCuCCGCgGUg -3'
miRNA:   3'- ggUgGUCGUCGUCgUGGuGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 131867 0.68 0.605533
Target:  5'- gCGCCGGCGGCgucgggucgcagGGCAgCACgGCCGa- -3'
miRNA:   3'- gGUGGUCGUCG------------UCGUgGUGgUGGCga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.