miRNA display CGI


Results 41 - 60 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 131640 0.66 0.706094
Target:  5'- cCCACCcacaGGUGGUcgGGCGCCGCagauccgACCGCg -3'
miRNA:   3'- -GGUGG----UCGUCG--UCGUGGUGg------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 131488 0.68 0.595458
Target:  5'- aCGuCCuGCAGguGCACCaggaGCC-CCGCg -3'
miRNA:   3'- gGU-GGuCGUCguCGUGG----UGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 131125 0.69 0.526025
Target:  5'- gCGCgggaGGCcGCGGCGCCGCgGCCGUc -3'
miRNA:   3'- gGUGg---UCGuCGUCGUGGUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 130875 0.66 0.744121
Target:  5'- aCCGCagugGGCGGCGGCgguggaggcggcgGCCGUCGCCGUc -3'
miRNA:   3'- -GGUGg---UCGUCGUCG-------------UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 130729 0.69 0.526025
Target:  5'- cCCGCgCGGCcgcggcGCAGCGCCACCcacgACgGCa -3'
miRNA:   3'- -GGUG-GUCGu-----CGUCGUGGUGG----UGgCGa -5'
29476 3' -59.5 NC_006151.1 + 130581 0.67 0.696173
Target:  5'- gCAUCuggaggugguGCAGCGGCACCAgCGCCu-- -3'
miRNA:   3'- gGUGGu---------CGUCGUCGUGGUgGUGGcga -5'
29476 3' -59.5 NC_006151.1 + 130488 0.79 0.151804
Target:  5'- gCCG-CAGCGcGCGGCGCCACaCGCCGCg -3'
miRNA:   3'- -GGUgGUCGU-CGUCGUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 130427 0.66 0.724768
Target:  5'- gCGCCGaccgucgaggacuGCAGCGGCGCCAgaaaCAUgGCg -3'
miRNA:   3'- gGUGGU-------------CGUCGUCGUGGUg---GUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 130297 0.67 0.676183
Target:  5'- gCGCCGGCcgacggcgcggAGC-GCGCgCGCCGCgCGCUc -3'
miRNA:   3'- gGUGGUCG-----------UCGuCGUG-GUGGUG-GCGA- -5'
29476 3' -59.5 NC_006151.1 + 130266 0.68 0.605533
Target:  5'- -gGCCGGCGcGCGGCcCCGagGCCGCg -3'
miRNA:   3'- ggUGGUCGU-CGUCGuGGUggUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 129619 0.66 0.754607
Target:  5'- gCACCAGCGGgucgAGCGCguCCAugagcuCCGCg -3'
miRNA:   3'- gGUGGUCGUCg---UCGUGguGGU------GGCGa -5'
29476 3' -59.5 NC_006151.1 + 129219 0.67 0.656051
Target:  5'- gCCGCCAGCAgGCAGCuGgCGCgGgUGCg -3'
miRNA:   3'- -GGUGGUCGU-CGUCG-UgGUGgUgGCGa -5'
29476 3' -59.5 NC_006151.1 + 129158 0.67 0.677186
Target:  5'- aCACUGGCucucggccacgucgcGCAGgGCCGCCACgGCc -3'
miRNA:   3'- gGUGGUCGu--------------CGUCgUGGUGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 128966 0.74 0.285693
Target:  5'- gCGCCAGUAGguG-GCCAgCACCGCg -3'
miRNA:   3'- gGUGGUCGUCguCgUGGUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 128611 0.72 0.3818
Target:  5'- gCCACCcGCGGCGuGCGCCccagguggcggACCACgCGCg -3'
miRNA:   3'- -GGUGGuCGUCGU-CGUGG-----------UGGUG-GCGa -5'
29476 3' -59.5 NC_006151.1 + 128550 0.7 0.469051
Target:  5'- cCCGCCGGC-GCGGUGCCGCC-CaaagaGCg -3'
miRNA:   3'- -GGUGGUCGuCGUCGUGGUGGuGg----CGa -5'
29476 3' -59.5 NC_006151.1 + 128404 0.66 0.754607
Target:  5'- gCCACgaCGGCGGCcGUgagGCCGCacaCGCCGCUc -3'
miRNA:   3'- -GGUG--GUCGUCGuCG---UGGUG---GUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 128247 0.66 0.751759
Target:  5'- gUCGCCgaucaggugguggaAGCGGCAcugcGCGCgCAgCGCCGCg -3'
miRNA:   3'- -GGUGG--------------UCGUCGU----CGUG-GUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 128048 0.71 0.424086
Target:  5'- gCAgCGGCGGCAGCGgCGgCugCGCg -3'
miRNA:   3'- gGUgGUCGUCGUCGUgGUgGugGCGa -5'
29476 3' -59.5 NC_006151.1 + 127857 0.74 0.299146
Target:  5'- gCGCCGGaGGgGGCGCCGCCcGCCGCc -3'
miRNA:   3'- gGUGGUCgUCgUCGUGGUGG-UGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.