miRNA display CGI


Results 61 - 80 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 127243 0.68 0.585409
Target:  5'- gCGCCAGCucuuGCGGCGCgACgCGCgGUg -3'
miRNA:   3'- gGUGGUCGu---CGUCGUGgUG-GUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 126190 0.74 0.285693
Target:  5'- cCUACCGGCA-CAucucGCGCCugCGCCGCa -3'
miRNA:   3'- -GGUGGUCGUcGU----CGUGGugGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 125274 0.7 0.516333
Target:  5'- gCCGCCGGCcGUcaacGGCACggggCACCugCGCa -3'
miRNA:   3'- -GGUGGUCGuCG----UCGUG----GUGGugGCGa -5'
29476 3' -59.5 NC_006151.1 + 125194 0.68 0.585409
Target:  5'- cUCGCCGGCGucgugggccccGCGGCccCCGCgGCCGCc -3'
miRNA:   3'- -GGUGGUCGU-----------CGUCGu-GGUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 124982 0.66 0.725744
Target:  5'- aCCugCAGC-GCGuGCACCuggGCgACUGCg -3'
miRNA:   3'- -GGugGUCGuCGU-CGUGG---UGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 124728 0.68 0.595458
Target:  5'- uCCAgCAGguGgAGCACUACUACC-Ca -3'
miRNA:   3'- -GGUgGUCguCgUCGUGGUGGUGGcGa -5'
29476 3' -59.5 NC_006151.1 + 124500 0.66 0.715954
Target:  5'- gCACCcGCGGCuGGCA-CACCACCa-- -3'
miRNA:   3'- gGUGGuCGUCG-UCGUgGUGGUGGcga -5'
29476 3' -59.5 NC_006151.1 + 123901 0.67 0.656051
Target:  5'- cCCGCCGu--GCGGCGCgGCgGCCGUg -3'
miRNA:   3'- -GGUGGUcguCGUCGUGgUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 123835 0.69 0.535785
Target:  5'- aCACCAcGCuGCAGCugCGCggggCGCCGUc -3'
miRNA:   3'- gGUGGU-CGuCGUCGugGUG----GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 123333 0.77 0.1997
Target:  5'- -gGCCAcGguGCAGCGCCACCccguggacGCCGCg -3'
miRNA:   3'- ggUGGU-CguCGUCGUGGUGG--------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 123144 0.69 0.545607
Target:  5'- gCGCgAGCAGCGGCGCgAgcuggagaagacCCugCGCg -3'
miRNA:   3'- gGUGgUCGUCGUCGUGgU------------GGugGCGa -5'
29476 3' -59.5 NC_006151.1 + 123071 0.68 0.625734
Target:  5'- aCGCCgAGCgccGGCGGCGCCugUacgcggACCGCc -3'
miRNA:   3'- gGUGG-UCG---UCGUCGUGGugG------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 123018 0.67 0.649994
Target:  5'- cCCGCCGGCggacgccguggcgugGGCGG-ACCugCcgGCCGCg -3'
miRNA:   3'- -GGUGGUCG---------------UCGUCgUGGugG--UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 122942 0.67 0.66613
Target:  5'- aCGCCGaCGGCGGCGCCGCggggggcgcggaCGCCGg- -3'
miRNA:   3'- gGUGGUcGUCGUCGUGGUG------------GUGGCga -5'
29476 3' -59.5 NC_006151.1 + 122652 0.69 0.535785
Target:  5'- aCgACCuGgAGCGGCGCgAgCGCCGCg -3'
miRNA:   3'- -GgUGGuCgUCGUCGUGgUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 122459 0.66 0.754607
Target:  5'- uCCACggCGGCGGCgGGCGCCGagGCCGg- -3'
miRNA:   3'- -GGUG--GUCGUCG-UCGUGGUggUGGCga -5'
29476 3' -59.5 NC_006151.1 + 122391 0.76 0.23048
Target:  5'- gCCGCgGGCgcgcgcuGGCGGCGCuCGCCGCCGUg -3'
miRNA:   3'- -GGUGgUCG-------UCGUCGUG-GUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 121988 0.68 0.605533
Target:  5'- aCCAUgGGCGGCGcGUGCCGcuuCCACgCGCg -3'
miRNA:   3'- -GGUGgUCGUCGU-CGUGGU---GGUG-GCGa -5'
29476 3' -59.5 NC_006151.1 + 121929 0.69 0.545607
Target:  5'- aCCGCguGCuGGgGGCGCUgGCCGCCGCc -3'
miRNA:   3'- -GGUGguCG-UCgUCGUGG-UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 121836 0.7 0.500979
Target:  5'- gCUACCucgcGCGGCGGCuGCCGCUggaggcgcagacgacGCCGCUc -3'
miRNA:   3'- -GGUGGu---CGUCGUCG-UGGUGG---------------UGGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.