miRNA display CGI


Results 81 - 100 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 121085 0.72 0.3818
Target:  5'- -gACgGGCGGCGGCGCCgggcugcacgACCACuCGCUc -3'
miRNA:   3'- ggUGgUCGUCGUCGUGG----------UGGUG-GCGA- -5'
29476 3' -59.5 NC_006151.1 + 120422 0.67 0.66613
Target:  5'- uCCugCuGaAGCAGCACCACgCGaCGCUg -3'
miRNA:   3'- -GGugGuCgUCGUCGUGGUG-GUgGCGA- -5'
29476 3' -59.5 NC_006151.1 + 120092 0.78 0.159659
Target:  5'- aCCAguuCCAGCcGguGCugCGCCGCCGCg -3'
miRNA:   3'- -GGU---GGUCGuCguCGugGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 120056 0.66 0.735456
Target:  5'- uCCACgGGCAGCccguggaggGGCGCaACUuCCGCa -3'
miRNA:   3'- -GGUGgUCGUCG---------UCGUGgUGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 119807 0.68 0.595458
Target:  5'- aCGCCGGCuucCGGCACgCGCUGCgCGCUc -3'
miRNA:   3'- gGUGGUCGuc-GUCGUG-GUGGUG-GCGA- -5'
29476 3' -59.5 NC_006151.1 + 119540 0.74 0.313083
Target:  5'- cCCGCCuGCGcGCAcacaacccuGCACCGCCugCGCc -3'
miRNA:   3'- -GGUGGuCGU-CGU---------CGUGGUGGugGCGa -5'
29476 3' -59.5 NC_006151.1 + 119244 0.68 0.625734
Target:  5'- uCUACCAGgUGGCGGCGCC-CUACCugGCc -3'
miRNA:   3'- -GGUGGUC-GUCGUCGUGGuGGUGG--CGa -5'
29476 3' -59.5 NC_006151.1 + 119040 0.77 0.194851
Target:  5'- gCGCCaaGGaCGGCGGCGCCGCgGCCGCc -3'
miRNA:   3'- gGUGG--UC-GUCGUCGUGGUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 118901 0.73 0.320235
Target:  5'- gCCGCCGGCGGCcucgAGCGCCGCauggcguCCGUc -3'
miRNA:   3'- -GGUGGUCGUCG----UCGUGGUGgu-----GGCGa -5'
29476 3' -59.5 NC_006151.1 + 118865 0.68 0.625734
Target:  5'- aCGCUcuuugAGCAGCGGCGgCGCgGCgGCg -3'
miRNA:   3'- gGUGG-----UCGUCGUCGUgGUGgUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 118318 0.67 0.696173
Target:  5'- aCUGCguGCccccgAGCAGCGCCGCgC-CCGCc -3'
miRNA:   3'- -GGUGguCG-----UCGUCGUGGUG-GuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 118150 0.72 0.406835
Target:  5'- aCGCCgcGGCGGUGGCGCCGCUGgUGCg -3'
miRNA:   3'- gGUGG--UCGUCGUCGUGGUGGUgGCGa -5'
29476 3' -59.5 NC_006151.1 + 117832 0.68 0.625734
Target:  5'- aC-CCGGCcggGGCGGgccggacucUACCACCGCCGCc -3'
miRNA:   3'- gGuGGUCG---UCGUC---------GUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 117711 0.7 0.469051
Target:  5'- gUCACgUAGCugcccuGCcGCGCCGCCAUCGCUc -3'
miRNA:   3'- -GGUG-GUCGu-----CGuCGUGGUGGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 117415 0.72 0.3818
Target:  5'- gCC-CCAGCAGCGugACCACCguGCCGUUg -3'
miRNA:   3'- -GGuGGUCGUCGUcgUGGUGG--UGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 117263 0.69 0.535785
Target:  5'- gCGCgGGCcGC-GCGCgGCCGCCGCc -3'
miRNA:   3'- gGUGgUCGuCGuCGUGgUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 116993 0.66 0.725744
Target:  5'- gCGCUGGUgccGCAGCACCACgCGcucccCCGCg -3'
miRNA:   3'- gGUGGUCGu--CGUCGUGGUG-GU-----GGCGa -5'
29476 3' -59.5 NC_006151.1 + 116299 0.74 0.299146
Target:  5'- uCCugCAcGCAGUAGCGCCcgaugaCGCCGCg -3'
miRNA:   3'- -GGugGU-CGUCGUCGUGGug----GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 115757 0.66 0.753658
Target:  5'- gCCGCCuGCugcuguccAGCAGCACgGCCuccucggGCgCGCUc -3'
miRNA:   3'- -GGUGGuCG--------UCGUCGUGgUGG-------UG-GCGA- -5'
29476 3' -59.5 NC_006151.1 + 115205 0.66 0.724768
Target:  5'- gCCGCgGGCGcGCGcGCgaucgugGCCGCUGCCGCc -3'
miRNA:   3'- -GGUGgUCGU-CGU-CG-------UGGUGGUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.