miRNA display CGI


Results 41 - 60 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 139024 0.66 0.754607
Target:  5'- cCCAUCAcGCuGGCA-CACCGCCAUcccaCGCUg -3'
miRNA:   3'- -GGUGGU-CG-UCGUcGUGGUGGUG----GCGA- -5'
29476 3' -59.5 NC_006151.1 + 139683 0.66 0.754607
Target:  5'- cCCugCGGCAGCGGCGgCGgCAgCaacaGCa -3'
miRNA:   3'- -GGugGUCGUCGUCGUgGUgGU-Gg---CGa -5'
29476 3' -59.5 NC_006151.1 + 15123 0.66 0.754607
Target:  5'- aCCGCCucuuucGCGGCAUCGCCgucucgGCCGCc -3'
miRNA:   3'- -GGUGGucgu--CGUCGUGGUGG------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 89923 0.66 0.754607
Target:  5'- uCCACgCuGUAGCcGCGCC-CCAgguCCGCg -3'
miRNA:   3'- -GGUG-GuCGUCGuCGUGGuGGU---GGCGa -5'
29476 3' -59.5 NC_006151.1 + 122459 0.66 0.754607
Target:  5'- uCCACggCGGCGGCgGGCGCCGagGCCGg- -3'
miRNA:   3'- -GGUG--GUCGUCG-UCGUGGUggUGGCga -5'
29476 3' -59.5 NC_006151.1 + 17907 0.66 0.754607
Target:  5'- -gACCAGC-GCGGCGgCGCUgAUCGCg -3'
miRNA:   3'- ggUGGUCGuCGUCGUgGUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 135315 0.66 0.754607
Target:  5'- aCCGagagguaCAGguGCaugAGCGCCGCCAggcacguguCCGCg -3'
miRNA:   3'- -GGUg------GUCguCG---UCGUGGUGGU---------GGCGa -5'
29476 3' -59.5 NC_006151.1 + 71024 0.66 0.745079
Target:  5'- gCCGCgAGCucGCGGaGCUGCgCGCCGCg -3'
miRNA:   3'- -GGUGgUCGu-CGUCgUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 82972 0.66 0.745079
Target:  5'- gUCACCuccauGCcGCGcgucuGCGCCGCCACgGCc -3'
miRNA:   3'- -GGUGGu----CGuCGU-----CGUGGUGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 99084 0.66 0.745079
Target:  5'- gCACCguGGC-GCGGCGCCugCGCaCGg- -3'
miRNA:   3'- gGUGG--UCGuCGUCGUGGugGUG-GCga -5'
29476 3' -59.5 NC_006151.1 + 112192 0.66 0.745079
Target:  5'- gCGCCGcGCccGCAGCGCCuCC-CCGUg -3'
miRNA:   3'- gGUGGU-CGu-CGUCGUGGuGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 128247 0.66 0.751759
Target:  5'- gUCGCCgaucaggugguggaAGCGGCAcugcGCGCgCAgCGCCGCg -3'
miRNA:   3'- -GGUGG--------------UCGUCGU----CGUG-GUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 2108 0.66 0.753658
Target:  5'- -aGCgGGCcGCGGgGCCggccgucGCCGCCGCg -3'
miRNA:   3'- ggUGgUCGuCGUCgUGG-------UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 67529 0.66 0.753658
Target:  5'- gCCACCAGgcgcCAGcCGGCgucguugACCACCAcguggcgcCCGCg -3'
miRNA:   3'- -GGUGGUC----GUC-GUCG-------UGGUGGU--------GGCGa -5'
29476 3' -59.5 NC_006151.1 + 81993 0.66 0.753658
Target:  5'- gCACCA-CGGCGGCcagggcgGCCGCgugCGCCGCc -3'
miRNA:   3'- gGUGGUcGUCGUCG-------UGGUG---GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 115757 0.66 0.753658
Target:  5'- gCCGCCuGCugcuguccAGCAGCACgGCCuccucggGCgCGCUc -3'
miRNA:   3'- -GGUGGuCG--------UCGUCGUGgUGG-------UG-GCGA- -5'
29476 3' -59.5 NC_006151.1 + 109519 0.66 0.753658
Target:  5'- gCCGCCgcAGCcgucucAGCAGCGCCcCCcggaggcGCCGUg -3'
miRNA:   3'- -GGUGG--UCG------UCGUCGUGGuGG-------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 36352 0.66 0.754607
Target:  5'- gCCGCCGacccCGGCAGCACuCGCaGCgGCa -3'
miRNA:   3'- -GGUGGUc---GUCGUCGUG-GUGgUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 114188 0.66 0.754607
Target:  5'- cCUACguGCAGCAGCucaacagcaucuACgAgUACCGCg -3'
miRNA:   3'- -GGUGguCGUCGUCG------------UGgUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 129619 0.66 0.754607
Target:  5'- gCACCAGCGGgucgAGCGCguCCAugagcuCCGCg -3'
miRNA:   3'- gGUGGUCGUCg---UCGUGguGGU------GGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.