miRNA display CGI


Results 101 - 120 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 3423 0.66 0.725744
Target:  5'- cUCGCCGGCcgggacGCGGCGgaaGCCGCCGUc -3'
miRNA:   3'- -GGUGGUCGu-----CGUCGUgg-UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 134013 0.66 0.725744
Target:  5'- gCCACCAGCGcGCagAGCGCgGCgACgaGCg -3'
miRNA:   3'- -GGUGGUCGU-CG--UCGUGgUGgUGg-CGa -5'
29476 3' -59.5 NC_006151.1 + 131913 0.66 0.725744
Target:  5'- -gGgCGGCAGCAGgGCCuCCGCgGUg -3'
miRNA:   3'- ggUgGUCGUCGUCgUGGuGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 116993 0.66 0.725744
Target:  5'- gCGCUGGUgccGCAGCACCACgCGcucccCCGCg -3'
miRNA:   3'- gGUGGUCGu--CGUCGUGGUG-GU-----GGCGa -5'
29476 3' -59.5 NC_006151.1 + 93443 0.66 0.725744
Target:  5'- -gGCgAGCGGgGGuCGCCGCCGCggggCGCUa -3'
miRNA:   3'- ggUGgUCGUCgUC-GUGGUGGUG----GCGA- -5'
29476 3' -59.5 NC_006151.1 + 120056 0.66 0.735456
Target:  5'- uCCACgGGCAGCccguggaggGGCGCaACUuCCGCa -3'
miRNA:   3'- -GGUGgUCGUCG---------UCGUGgUGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 136038 0.66 0.735456
Target:  5'- uCCuCgAGCAGguGCGCCcGCgCACCGg- -3'
miRNA:   3'- -GGuGgUCGUCguCGUGG-UG-GUGGCga -5'
29476 3' -59.5 NC_006151.1 + 3968 0.66 0.745079
Target:  5'- gCCGCgCGGCGGCcucGGCGa-GCCgGCCGCg -3'
miRNA:   3'- -GGUG-GUCGUCG---UCGUggUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 141638 0.66 0.745079
Target:  5'- gCUGCC-GCGGCGGCGCggcgggGCC-CCGCg -3'
miRNA:   3'- -GGUGGuCGUCGUCGUGg-----UGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 12419 0.66 0.745079
Target:  5'- -gGCUGGguGgGGUgaggcgagugACCGCCACCGCc -3'
miRNA:   3'- ggUGGUCguCgUCG----------UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 130875 0.66 0.744121
Target:  5'- aCCGCagugGGCGGCGGCgguggaggcggcgGCCGUCGCCGUc -3'
miRNA:   3'- -GGUGg---UCGUCGUCG-------------UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 97482 0.66 0.744121
Target:  5'- aCCGCCAcguggacGC-GCAGCGCC-UCGCgGCg -3'
miRNA:   3'- -GGUGGU-------CGuCGUCGUGGuGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 90690 0.66 0.744121
Target:  5'- cCCGCggCGGgGGCGGCGgacgcgcCCGCC-CCGCa -3'
miRNA:   3'- -GGUG--GUCgUCGUCGU-------GGUGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 73112 0.66 0.742202
Target:  5'- cUCGCCGGCGGC-GCGCCcgcgcggguugcacGCgCGCCGa- -3'
miRNA:   3'- -GGUGGUCGUCGuCGUGG--------------UG-GUGGCga -5'
29476 3' -59.5 NC_006151.1 + 42560 0.66 0.741241
Target:  5'- cCCGCCAccccccucucCGGCGCCACgCGCCGCc -3'
miRNA:   3'- -GGUGGUcguc------GUCGUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 132512 0.66 0.739316
Target:  5'- gCGCCcGCAGCGuggacacgaagaagcGCuCCACgGCCGCc -3'
miRNA:   3'- gGUGGuCGUCGU---------------CGuGGUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 70203 0.66 0.739316
Target:  5'- cUCGuuGGCGaugugggcguccaucGCGGCGCCGCuCACCGUc -3'
miRNA:   3'- -GGUggUCGU---------------CGUCGUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 107930 0.66 0.735456
Target:  5'- aCC-CCAG-GGUccccCACCGCCGCCGCa -3'
miRNA:   3'- -GGuGGUCgUCGuc--GUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 106378 0.66 0.735456
Target:  5'- gCGCCcGCcGCGGCGCC-CgCugCGCg -3'
miRNA:   3'- gGUGGuCGuCGUCGUGGuG-GugGCGa -5'
29476 3' -59.5 NC_006151.1 + 81366 0.66 0.735456
Target:  5'- gCC-CCGGCGGgcgcCAGCGCgaGCCgcGCCGCg -3'
miRNA:   3'- -GGuGGUCGUC----GUCGUGg-UGG--UGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.