miRNA display CGI


Results 121 - 140 of 472 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 112966 0.66 0.715954
Target:  5'- uUCACCguGGCGGaCGcGCGCgCGCCGCCGa- -3'
miRNA:   3'- -GGUGG--UCGUC-GU-CGUG-GUGGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 90367 0.66 0.715954
Target:  5'- aCGCCG--AGCAGCAUCGucgaCGCCGCg -3'
miRNA:   3'- gGUGGUcgUCGUCGUGGUg---GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 39099 0.66 0.725744
Target:  5'- cCCACgAGgAGCucuGCGCCGagcCCGCCGa- -3'
miRNA:   3'- -GGUGgUCgUCGu--CGUGGU---GGUGGCga -5'
29476 3' -59.5 NC_006151.1 + 39567 0.66 0.725744
Target:  5'- cCCGCCuGCAcccCGGgGCCgaGCCGCUGCg -3'
miRNA:   3'- -GGUGGuCGUc--GUCgUGG--UGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 54305 0.66 0.725744
Target:  5'- gCCGCCGuGCGGCAGauccaguCCA-CGCUGCUc -3'
miRNA:   3'- -GGUGGU-CGUCGUCgu-----GGUgGUGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 90690 0.66 0.744121
Target:  5'- cCCGCggCGGgGGCGGCGgacgcgcCCGCC-CCGCa -3'
miRNA:   3'- -GGUG--GUCgUCGUCGU-------GGUGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 73112 0.66 0.742202
Target:  5'- cUCGCCGGCGGC-GCGCCcgcgcggguugcacGCgCGCCGa- -3'
miRNA:   3'- -GGUGGUCGUCGuCGUGG--------------UG-GUGGCga -5'
29476 3' -59.5 NC_006151.1 + 42560 0.66 0.741241
Target:  5'- cCCGCCAccccccucucCGGCGCCACgCGCCGCc -3'
miRNA:   3'- -GGUGGUcguc------GUCGUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 132512 0.66 0.739316
Target:  5'- gCGCCcGCAGCGuggacacgaagaagcGCuCCACgGCCGCc -3'
miRNA:   3'- gGUGGuCGUCGU---------------CGuGGUGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 70203 0.66 0.739316
Target:  5'- cUCGuuGGCGaugugggcguccaucGCGGCGCCGCuCACCGUc -3'
miRNA:   3'- -GGUggUCGU---------------CGUCGUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 107930 0.66 0.735456
Target:  5'- aCC-CCAG-GGUccccCACCGCCGCCGCa -3'
miRNA:   3'- -GGuGGUCgUCGuc--GUGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 106378 0.66 0.735456
Target:  5'- gCGCCcGCcGCGGCGCC-CgCugCGCg -3'
miRNA:   3'- gGUGGuCGuCGUCGUGGuG-GugGCGa -5'
29476 3' -59.5 NC_006151.1 + 81366 0.66 0.735456
Target:  5'- gCC-CCGGCGGgcgcCAGCGCgaGCCgcGCCGCg -3'
miRNA:   3'- -GGuGGUCGUC----GUCGUGg-UGG--UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 136038 0.66 0.735456
Target:  5'- uCCuCgAGCAGguGCGCCcGCgCACCGg- -3'
miRNA:   3'- -GGuGgUCGUCguCGUGG-UG-GUGGCga -5'
29476 3' -59.5 NC_006151.1 + 120056 0.66 0.735456
Target:  5'- uCCACgGGCAGCccguggaggGGCGCaACUuCCGCa -3'
miRNA:   3'- -GGUGgUCGUCG---------UCGUGgUGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 50160 0.66 0.735456
Target:  5'- cCCgACgAGCGGacgAGCGCgGCCgGCCGCg -3'
miRNA:   3'- -GG-UGgUCGUCg--UCGUGgUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 21653 0.66 0.734488
Target:  5'- gUACCAGUAGUu-CACCACCucccggugcggggGCUGCUg -3'
miRNA:   3'- gGUGGUCGUCGucGUGGUGG-------------UGGCGA- -5'
29476 3' -59.5 NC_006151.1 + 124982 0.66 0.725744
Target:  5'- aCCugCAGC-GCGuGCACCuggGCgACUGCg -3'
miRNA:   3'- -GGugGUCGuCGU-CGUGG---UGgUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 112815 0.66 0.725744
Target:  5'- gUCGCU-GCAGC-GCGCCuucGCCACgCGCg -3'
miRNA:   3'- -GGUGGuCGUCGuCGUGG---UGGUG-GCGa -5'
29476 3' -59.5 NC_006151.1 + 99135 0.66 0.725744
Target:  5'- aCC-CCGGgGcGCAgGCcgugcacgugGCCGCCGCCGCg -3'
miRNA:   3'- -GGuGGUCgU-CGU-CG----------UGGUGGUGGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.