miRNA display CGI


Results 21 - 40 of 472 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 3' -59.5 NC_006151.1 + 67529 0.66 0.753658
Target:  5'- gCCACCAGgcgcCAGcCGGCgucguugACCACCAcguggcgcCCGCg -3'
miRNA:   3'- -GGUGGUC----GUC-GUCG-------UGGUGGU--------GGCGa -5'
29476 3' -59.5 NC_006151.1 + 81993 0.66 0.753658
Target:  5'- gCACCA-CGGCGGCcagggcgGCCGCgugCGCCGCc -3'
miRNA:   3'- gGUGGUcGUCGUCG-------UGGUG---GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 115757 0.66 0.753658
Target:  5'- gCCGCCuGCugcuguccAGCAGCACgGCCuccucggGCgCGCUc -3'
miRNA:   3'- -GGUGGuCG--------UCGUCGUGgUGG-------UG-GCGA- -5'
29476 3' -59.5 NC_006151.1 + 109519 0.66 0.753658
Target:  5'- gCCGCCgcAGCcgucucAGCAGCGCCcCCcggaggcGCCGUg -3'
miRNA:   3'- -GGUGG--UCG------UCGUCGUGGuGG-------UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 128247 0.66 0.751759
Target:  5'- gUCGCCgaucaggugguggaAGCGGCAcugcGCGCgCAgCGCCGCg -3'
miRNA:   3'- -GGUGG--------------UCGUCGU----CGUG-GUgGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 12419 0.66 0.745079
Target:  5'- -gGCUGGguGgGGUgaggcgagugACCGCCACCGCc -3'
miRNA:   3'- ggUGGUCguCgUCG----------UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 141638 0.66 0.745079
Target:  5'- gCUGCC-GCGGCGGCGCggcgggGCC-CCGCg -3'
miRNA:   3'- -GGUGGuCGUCGUCGUGg-----UGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 3968 0.66 0.745079
Target:  5'- gCCGCgCGGCGGCcucGGCGa-GCCgGCCGCg -3'
miRNA:   3'- -GGUG-GUCGUCG---UCGUggUGG-UGGCGa -5'
29476 3' -59.5 NC_006151.1 + 24523 0.66 0.745079
Target:  5'- gCCGCCAcguuGCAGC-GCGCgGCC-CCGa- -3'
miRNA:   3'- -GGUGGU----CGUCGuCGUGgUGGuGGCga -5'
29476 3' -59.5 NC_006151.1 + 61708 0.66 0.745079
Target:  5'- -gACCAGCuucuucGGCuuCACgGCCACCGUg -3'
miRNA:   3'- ggUGGUCG------UCGucGUGgUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 71024 0.66 0.745079
Target:  5'- gCCGCgAGCucGCGGaGCUGCgCGCCGCg -3'
miRNA:   3'- -GGUGgUCGu-CGUCgUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 82972 0.66 0.745079
Target:  5'- gUCACCuccauGCcGCGcgucuGCGCCGCCACgGCc -3'
miRNA:   3'- -GGUGGu----CGuCGU-----CGUGGUGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 99084 0.66 0.745079
Target:  5'- gCACCguGGC-GCGGCGCCugCGCaCGg- -3'
miRNA:   3'- gGUGG--UCGuCGUCGUGGugGUG-GCga -5'
29476 3' -59.5 NC_006151.1 + 112192 0.66 0.745079
Target:  5'- gCGCCGcGCccGCAGCGCCuCC-CCGUg -3'
miRNA:   3'- gGUGGU-CGu-CGUCGUGGuGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 90690 0.66 0.744121
Target:  5'- cCCGCggCGGgGGCGGCGgacgcgcCCGCC-CCGCa -3'
miRNA:   3'- -GGUG--GUCgUCGUCGU-------GGUGGuGGCGa -5'
29476 3' -59.5 NC_006151.1 + 97482 0.66 0.744121
Target:  5'- aCCGCCAcguggacGC-GCAGCGCC-UCGCgGCg -3'
miRNA:   3'- -GGUGGU-------CGuCGUCGUGGuGGUGgCGa -5'
29476 3' -59.5 NC_006151.1 + 130875 0.66 0.744121
Target:  5'- aCCGCagugGGCGGCGGCgguggaggcggcgGCCGUCGCCGUc -3'
miRNA:   3'- -GGUGg---UCGUCGUCG-------------UGGUGGUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 73112 0.66 0.742202
Target:  5'- cUCGCCGGCGGC-GCGCCcgcgcggguugcacGCgCGCCGa- -3'
miRNA:   3'- -GGUGGUCGUCGuCGUGG--------------UG-GUGGCga -5'
29476 3' -59.5 NC_006151.1 + 42560 0.66 0.741241
Target:  5'- cCCGCCAccccccucucCGGCGCCACgCGCCGCc -3'
miRNA:   3'- -GGUGGUcguc------GUCGUGGUG-GUGGCGa -5'
29476 3' -59.5 NC_006151.1 + 70203 0.66 0.739316
Target:  5'- cUCGuuGGCGaugugggcguccaucGCGGCGCCGCuCACCGUc -3'
miRNA:   3'- -GGUggUCGU---------------CGUCGUGGUG-GUGGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.