miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 114171 0.68 0.80812
Target:  5'- cGCGGCccucgugcuGGCcuacguGCAGCAGCu-CAACAGCa -3'
miRNA:   3'- -CGUCG---------UCGu-----CGUCGUCGucGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 113041 0.68 0.80812
Target:  5'- gGguGCugcGCGGCGGCGGagcGCGAgGACg -3'
miRNA:   3'- -CguCGu--CGUCGUCGUCgu-CGUUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 88063 0.68 0.80812
Target:  5'- gGCAGCugcgagGGCaggcccucgaGGCGGCAGguGUAGuCGACg -3'
miRNA:   3'- -CGUCG------UCG----------UCGUCGUCguCGUU-GUUG- -5'
29476 5' -54.7 NC_006151.1 + 111514 0.68 0.807196
Target:  5'- cGCGGCaugcgcacgaAGCAGCucaccgacaucauGGCGcGCAGCGGCcGCg -3'
miRNA:   3'- -CGUCG----------UCGUCG-------------UCGU-CGUCGUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 69722 0.68 0.807196
Target:  5'- gGCAGCAGCGcgucgauGUGGCcccccGCGGCcGCGACc -3'
miRNA:   3'- -CGUCGUCGU-------CGUCGu----CGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 132157 0.68 0.798806
Target:  5'- aCGGCGcGCAGCugcGCGGCcGGCAcCGGCg -3'
miRNA:   3'- cGUCGU-CGUCGu--CGUCG-UCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 129704 0.68 0.798806
Target:  5'- cGCGGC-GCcgAGCAgGCAGUugAGCAGCAGg -3'
miRNA:   3'- -CGUCGuCG--UCGU-CGUCG--UCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 4793 0.68 0.798806
Target:  5'- gGCcGCGGC-GCGGUAGCGgGCcGCGGCc -3'
miRNA:   3'- -CGuCGUCGuCGUCGUCGU-CGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 59738 0.68 0.798806
Target:  5'- -uGGCgAGC-GCGcGCAGCAGCuccuGCAGCu -3'
miRNA:   3'- cgUCG-UCGuCGU-CGUCGUCGu---UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 122446 0.68 0.80812
Target:  5'- gGCGGaGGCGGCGuccaCGGCGGCGGCGGg -3'
miRNA:   3'- -CGUCgUCGUCGUc---GUCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 3972 0.68 0.80812
Target:  5'- cGCGGCGGCcuCGGCgAGCcGGCcGCGGCc -3'
miRNA:   3'- -CGUCGUCGucGUCG-UCG-UCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 134209 0.68 0.81726
Target:  5'- cGCAGC-GCGGgGGCGGUcGCAccacCAACg -3'
miRNA:   3'- -CGUCGuCGUCgUCGUCGuCGUu---GUUG- -5'
29476 5' -54.7 NC_006151.1 + 134017 0.68 0.81726
Target:  5'- cCAGCGcGCAG-AGC-GCGGCGACGAg -3'
miRNA:   3'- cGUCGU-CGUCgUCGuCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 76757 0.68 0.81726
Target:  5'- cGCGGCAGCAGgaaGGCgAGCGcgucgcagacGCAGuCGGCg -3'
miRNA:   3'- -CGUCGUCGUCg--UCG-UCGU----------CGUU-GUUG- -5'
29476 5' -54.7 NC_006151.1 + 67979 0.68 0.81726
Target:  5'- cGCAGUcGCGGCGGCccgccGGCGccGCGGCcACg -3'
miRNA:   3'- -CGUCGuCGUCGUCG-----UCGU--CGUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 69024 0.68 0.81726
Target:  5'- cCAGCAGCAcCAGCuccGCGGUGGCGu- -3'
miRNA:   3'- cGUCGUCGUcGUCGu--CGUCGUUGUug -5'
29476 5' -54.7 NC_006151.1 + 30077 0.68 0.813626
Target:  5'- gGCGGCGGUAGaCGGauguaguguacgaGGCGGCGAguACg -3'
miRNA:   3'- -CGUCGUCGUC-GUCg------------UCGUCGUUguUG- -5'
29476 5' -54.7 NC_006151.1 + 44658 0.68 0.811798
Target:  5'- gGCcGCGGCAGCccgacacaugcgcacGGCGGCcGGCGGCuGACc -3'
miRNA:   3'- -CGuCGUCGUCG---------------UCGUCG-UCGUUG-UUG- -5'
29476 5' -54.7 NC_006151.1 + 96473 0.68 0.80812
Target:  5'- cGCGGCuccGCAcGC-GCAGguGCAcCAGCu -3'
miRNA:   3'- -CGUCGu--CGU-CGuCGUCguCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 81515 0.68 0.797865
Target:  5'- cGCGGCccgcgugAGCucGGCGGCcGCGGCGGCGc- -3'
miRNA:   3'- -CGUCG-------UCG--UCGUCGuCGUCGUUGUug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.