Results 41 - 60 of 190 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
29476 | 5' | -54.7 | NC_006151.1 | + | 84690 | 0.75 | 0.402368 |
Target: 5'- aGCAGCuGCGGCcgcuggAGCGGCAGguGgAGCg -3' miRNA: 3'- -CGUCGuCGUCG------UCGUCGUCguUgUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 48734 | 0.75 | 0.384699 |
Target: 5'- gGCAcGCccGCGGCGuCGGCGGCAACAACa -3' miRNA: 3'- -CGU-CGu-CGUCGUcGUCGUCGUUGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 116432 | 0.75 | 0.384699 |
Target: 5'- uCGGCAGCuuCAGCuugucGGCGGCGACGGCg -3' miRNA: 3'- cGUCGUCGucGUCG-----UCGUCGUUGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 74499 | 0.74 | 0.468064 |
Target: 5'- cGCAGUcccagaugAGCGGgGGCAGCAGCGugGc- -3' miRNA: 3'- -CGUCG--------UCGUCgUCGUCGUCGUugUug -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 36362 | 0.74 | 0.467086 |
Target: 5'- cCGGCAGCAcucGCAGCGGCAGaggccggggccccCGGCGGCc -3' miRNA: 3'- cGUCGUCGU---CGUCGUCGUC-------------GUUGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 133352 | 0.74 | 0.452549 |
Target: 5'- cGCGGCGGCGGUgguggugguggugguGGUGGCGGCcggGGCGGCg -3' miRNA: 3'- -CGUCGUCGUCG---------------UCGUCGUCG---UUGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 2591 | 0.74 | 0.477898 |
Target: 5'- cGCuGGCGGUAgGCGcGCGGCGGCAGCGGg -3' miRNA: 3'- -CG-UCGUCGU-CGU-CGUCGUCGUUGUUg -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 67803 | 0.74 | 0.439208 |
Target: 5'- cGCGGCAcucGCGGCAGCAGCuGCcGCc-- -3' miRNA: 3'- -CGUCGU---CGUCGUCGUCGuCGuUGuug -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 84416 | 0.74 | 0.448715 |
Target: 5'- cGCGGUgauaaGGCGGCGcGCGGCGGCGcGCGGCc -3' miRNA: 3'- -CGUCG-----UCGUCGU-CGUCGUCGU-UGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 48655 | 0.74 | 0.458335 |
Target: 5'- uGCAGCAGCAGCccccgccggGGCAGgGGCcGgGGCc -3' miRNA: 3'- -CGUCGUCGUCG---------UCGUCgUCGuUgUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 85636 | 0.74 | 0.433559 |
Target: 5'- cGCGGCgccAGCGGgGacgcgcccgccucgcGCAGCGGCGACGGCa -3' miRNA: 3'- -CGUCG---UCGUCgU---------------CGUCGUCGUUGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 104573 | 0.74 | 0.438263 |
Target: 5'- cGCGGCGcGCGGacgugcugcaggcCGGCGGCAGCcGCGGCg -3' miRNA: 3'- -CGUCGU-CGUC-------------GUCGUCGUCGuUGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 2283 | 0.74 | 0.458335 |
Target: 5'- cCGGCGG-GGCGcccGCGGCGGCGACGGCg -3' miRNA: 3'- cGUCGUCgUCGU---CGUCGUCGUUGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 104843 | 0.73 | 0.507986 |
Target: 5'- cGCGGCGGaGGCGGaccaGGCcGCGGCGACg -3' miRNA: 3'- -CGUCGUCgUCGUCg---UCGuCGUUGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 25375 | 0.73 | 0.518195 |
Target: 5'- gGCGGCGGUgacGGCGGCGGUGGUucuCGACc -3' miRNA: 3'- -CGUCGUCG---UCGUCGUCGUCGuu-GUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 53967 | 0.73 | 0.518195 |
Target: 5'- cCAGCGGCGGCGGCGccuccGCgGGCGucGCGGCg -3' miRNA: 3'- cGUCGUCGUCGUCGU-----CG-UCGU--UGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 103331 | 0.73 | 0.518195 |
Target: 5'- cGCAcGCuGguGCAgGCGGC-GCAGCAGCg -3' miRNA: 3'- -CGU-CGuCguCGU-CGUCGuCGUUGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 47628 | 0.73 | 0.528484 |
Target: 5'- uGUAGUauuuGGCGGCGGCGcGCGGUAcuGCAACu -3' miRNA: 3'- -CGUCG----UCGUCGUCGU-CGUCGU--UGUUG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 135087 | 0.73 | 0.518195 |
Target: 5'- gGCGGgGGCGGCggggccgggcgGGCGGCGGUAGCGcGCg -3' miRNA: 3'- -CGUCgUCGUCG-----------UCGUCGUCGUUGU-UG- -5' |
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29476 | 5' | -54.7 | NC_006151.1 | + | 5245 | 0.73 | 0.507986 |
Target: 5'- cGCGGCGGCGGCGGgGGCccgGGgGGCGGa -3' miRNA: 3'- -CGUCGUCGUCGUCgUCG---UCgUUGUUg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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