miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 116432 0.75 0.384699
Target:  5'- uCGGCAGCuuCAGCuugucGGCGGCGACGGCg -3'
miRNA:   3'- cGUCGUCGucGUCG-----UCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 50622 0.75 0.384699
Target:  5'- cGCGGCAGCGuGCAcGCcuCGGCGACGGCc -3'
miRNA:   3'- -CGUCGUCGU-CGU-CGucGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 84690 0.75 0.402368
Target:  5'- aGCAGCuGCGGCcgcuggAGCGGCAGguGgAGCg -3'
miRNA:   3'- -CGUCGuCGUCG------UCGUCGUCguUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 85636 0.74 0.433559
Target:  5'- cGCGGCgccAGCGGgGacgcgcccgccucgcGCAGCGGCGACGGCa -3'
miRNA:   3'- -CGUCG---UCGUCgU---------------CGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 104573 0.74 0.438263
Target:  5'- cGCGGCGcGCGGacgugcugcaggcCGGCGGCAGCcGCGGCg -3'
miRNA:   3'- -CGUCGU-CGUC-------------GUCGUCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 67803 0.74 0.439208
Target:  5'- cGCGGCAcucGCGGCAGCAGCuGCcGCc-- -3'
miRNA:   3'- -CGUCGU---CGUCGUCGUCGuCGuUGuug -5'
29476 5' -54.7 NC_006151.1 + 84416 0.74 0.448715
Target:  5'- cGCGGUgauaaGGCGGCGcGCGGCGGCGcGCGGCc -3'
miRNA:   3'- -CGUCG-----UCGUCGU-CGUCGUCGU-UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 133352 0.74 0.452549
Target:  5'- cGCGGCGGCGGUgguggugguggugguGGUGGCGGCcggGGCGGCg -3'
miRNA:   3'- -CGUCGUCGUCG---------------UCGUCGUCG---UUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 2283 0.74 0.458335
Target:  5'- cCGGCGG-GGCGcccGCGGCGGCGACGGCg -3'
miRNA:   3'- cGUCGUCgUCGU---CGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 48655 0.74 0.458335
Target:  5'- uGCAGCAGCAGCccccgccggGGCAGgGGCcGgGGCc -3'
miRNA:   3'- -CGUCGUCGUCG---------UCGUCgUCGuUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 36362 0.74 0.467086
Target:  5'- cCGGCAGCAcucGCAGCGGCAGaggccggggccccCGGCGGCc -3'
miRNA:   3'- cGUCGUCGU---CGUCGUCGUC-------------GUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 74499 0.74 0.468064
Target:  5'- cGCAGUcccagaugAGCGGgGGCAGCAGCGugGc- -3'
miRNA:   3'- -CGUCG--------UCGUCgUCGUCGUCGUugUug -5'
29476 5' -54.7 NC_006151.1 + 2591 0.74 0.477898
Target:  5'- cGCuGGCGGUAgGCGcGCGGCGGCAGCGGg -3'
miRNA:   3'- -CG-UCGUCGU-CGU-CGUCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 83593 0.73 0.487833
Target:  5'- aGCGGgaccaGGCGcguguGCAGCAGCAGguACGGCg -3'
miRNA:   3'- -CGUCg----UCGU-----CGUCGUCGUCguUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 104843 0.73 0.507986
Target:  5'- cGCGGCGGaGGCGGaccaGGCcGCGGCGACg -3'
miRNA:   3'- -CGUCGUCgUCGUCg---UCGuCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 5245 0.73 0.507986
Target:  5'- cGCGGCGGCGGCGGgGGCccgGGgGGCGGa -3'
miRNA:   3'- -CGUCGUCGUCGUCgUCG---UCgUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 25375 0.73 0.518195
Target:  5'- gGCGGCGGUgacGGCGGCGGUGGUucuCGACc -3'
miRNA:   3'- -CGUCGUCG---UCGUCGUCGUCGuu-GUUG- -5'
29476 5' -54.7 NC_006151.1 + 53967 0.73 0.518195
Target:  5'- cCAGCGGCGGCGGCGccuccGCgGGCGucGCGGCg -3'
miRNA:   3'- cGUCGUCGUCGUCGU-----CG-UCGU--UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 135087 0.73 0.518195
Target:  5'- gGCGGgGGCGGCggggccgggcgGGCGGCGGUAGCGcGCg -3'
miRNA:   3'- -CGUCgUCGUCG-----------UCGUCGUCGUUGU-UG- -5'
29476 5' -54.7 NC_006151.1 + 103331 0.73 0.518195
Target:  5'- cGCAcGCuGguGCAgGCGGC-GCAGCAGCg -3'
miRNA:   3'- -CGU-CGuCguCGU-CGUCGuCGUUGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.