miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 47628 0.73 0.528484
Target:  5'- uGUAGUauuuGGCGGCGGCGcGCGGUAcuGCAACu -3'
miRNA:   3'- -CGUCG----UCGUCGUCGU-CGUCGU--UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 30865 0.72 0.543012
Target:  5'- gGCGGCGGCGGCGGaggaggggggaagaGGCGGCgAGCGGa -3'
miRNA:   3'- -CGUCGUCGUCGUCg-------------UCGUCG-UUGUUg -5'
29476 5' -54.7 NC_006151.1 + 103633 0.72 0.549279
Target:  5'- cGCGGUGGCGGCGGCgcuGGCGGaCGcggacACGGCg -3'
miRNA:   3'- -CGUCGUCGUCGUCG---UCGUC-GU-----UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 47582 0.72 0.559773
Target:  5'- uGCAGCcGCGGUAaacuGCAGUAcGCGGCGGCc -3'
miRNA:   3'- -CGUCGuCGUCGU----CGUCGU-CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 3248 0.72 0.569265
Target:  5'- cGCGGCGGCggAGCGgggcgccGCGGCGcGCGGCGAUg -3'
miRNA:   3'- -CGUCGUCG--UCGU-------CGUCGU-CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 89488 0.72 0.570322
Target:  5'- cGCGGCGGCGagccgguacgcGCGGguGUGGC-GCAGCg -3'
miRNA:   3'- -CGUCGUCGU-----------CGUCguCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 87402 0.72 0.570322
Target:  5'- cGCAGCAGCcGguGguGguGCAGgccCAGCc -3'
miRNA:   3'- -CGUCGUCGuCguCguCguCGUU---GUUG- -5'
29476 5' -54.7 NC_006151.1 + 75119 0.72 0.570322
Target:  5'- cCAGCAGCuggucGGCGGcCGGCGGC-GCGGCc -3'
miRNA:   3'- cGUCGUCG-----UCGUC-GUCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 4324 0.72 0.570322
Target:  5'- cGCGGCcgGGCuGC-GCGGCGGCGaagGCGGCg -3'
miRNA:   3'- -CGUCG--UCGuCGuCGUCGUCGU---UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 17913 0.72 0.580919
Target:  5'- cGCGGCGGCGcugaucGCgacgcccaucaGGCAGCGGCGGCGu- -3'
miRNA:   3'- -CGUCGUCGU------CG-----------UCGUCGUCGUUGUug -5'
29476 5' -54.7 NC_006151.1 + 72745 0.72 0.590491
Target:  5'- cGCAGCAGCGccgagucgcuggcGCA-CAGCGGCGGguACg -3'
miRNA:   3'- -CGUCGUCGU-------------CGUcGUCGUCGUUguUG- -5'
29476 5' -54.7 NC_006151.1 + 130580 0.72 0.591556
Target:  5'- uGCAucuGgAGguGguGCAGCGGCAcCAGCg -3'
miRNA:   3'- -CGU---CgUCguCguCGUCGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 17403 0.72 0.591556
Target:  5'- gGCGcGUGGCGcGCGGCAGCAGgGcCAGCg -3'
miRNA:   3'- -CGU-CGUCGU-CGUCGUCGUCgUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 96219 0.72 0.591556
Target:  5'- cGUGGCGGCGGCcGCGGCgaGGCGcACAAa -3'
miRNA:   3'- -CGUCGUCGUCGuCGUCG--UCGU-UGUUg -5'
29476 5' -54.7 NC_006151.1 + 2673 0.72 0.591556
Target:  5'- gGCGGCAGaGGC-GCAGCGGCu-CGGCc -3'
miRNA:   3'- -CGUCGUCgUCGuCGUCGUCGuuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 103824 0.71 0.599022
Target:  5'- cGUGGCGGCGGCcguggagaugcucgGGCGGCuGCGcgcGCAGCc -3'
miRNA:   3'- -CGUCGUCGUCG--------------UCGUCGuCGU---UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 96040 0.71 0.602226
Target:  5'- cGCGGCAGgggguuCAGCAgGUAGCAGCuGGCGAg -3'
miRNA:   3'- -CGUCGUC------GUCGU-CGUCGUCG-UUGUUg -5'
29476 5' -54.7 NC_006151.1 + 121708 0.71 0.602226
Target:  5'- aGCGGCGGCucguGGCGGUccuggGGCAGguGCAGa -3'
miRNA:   3'- -CGUCGUCG----UCGUCG-----UCGUCguUGUUg -5'
29476 5' -54.7 NC_006151.1 + 58399 0.71 0.622558
Target:  5'- cGCAGCcggccauGGCGcGCAGCugGGCGuGCGGCAGCc -3'
miRNA:   3'- -CGUCG-------UCGU-CGUCG--UCGU-CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 58831 0.71 0.634346
Target:  5'- cGUcGCGGCA-CAGCAGguGCGcCAGCg -3'
miRNA:   3'- -CGuCGUCGUcGUCGUCguCGUuGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.