miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 57447 0.66 0.882293
Target:  5'- cGCGGCGGCccccgcgucggccAGguGCcGCGccGCGGCGGCc -3'
miRNA:   3'- -CGUCGUCG-------------UCguCGuCGU--CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 57516 0.76 0.366707
Target:  5'- cGCGGCGGCGGCGGCcgccuccGGC-GCGGCcGCg -3'
miRNA:   3'- -CGUCGUCGUCGUCG-------UCGuCGUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 58399 0.71 0.622558
Target:  5'- cGCAGCcggccauGGCGcGCAGCugGGCGuGCGGCAGCc -3'
miRNA:   3'- -CGUCG-------UCGU-CGUCG--UCGU-CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 58831 0.71 0.634346
Target:  5'- cGUcGCGGCA-CAGCAGguGCGcCAGCg -3'
miRNA:   3'- -CGuCGUCGUcGUCGUCguCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 59164 0.69 0.759997
Target:  5'- cCGGCGucgcGCAGCAGC-GCGGCGAUcuCg -3'
miRNA:   3'- cGUCGU----CGUCGUCGuCGUCGUUGuuG- -5'
29476 5' -54.7 NC_006151.1 + 59402 0.79 0.231567
Target:  5'- gGCAccGCAGCaccucgAGCAGCAGCGGCGcCAGCu -3'
miRNA:   3'- -CGU--CGUCG------UCGUCGUCGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 59738 0.68 0.798806
Target:  5'- -uGGCgAGC-GCGcGCAGCAGCuccuGCAGCu -3'
miRNA:   3'- cgUCG-UCGuCGU-CGUCGUCGu---UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 59941 0.66 0.890215
Target:  5'- uCAGCGGCGGCucGCAGCccucgAGCGcCAcccGCa -3'
miRNA:   3'- cGUCGUCGUCGu-CGUCG-----UCGUuGU---UG- -5'
29476 5' -54.7 NC_006151.1 + 60108 0.68 0.789326
Target:  5'- -gGGCGGCAGCGGC-GCuGgAACuGCg -3'
miRNA:   3'- cgUCGUCGUCGUCGuCGuCgUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 60748 0.7 0.666447
Target:  5'- gGCAGCGGCGGCucGCgaaGGCGGUcgUGGCg -3'
miRNA:   3'- -CGUCGUCGUCGu-CG---UCGUCGuuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 60876 0.76 0.334861
Target:  5'- cGCGGCAGCcGC-GCAGCAGCcGCGcgaGCa -3'
miRNA:   3'- -CGUCGUCGuCGuCGUCGUCGuUGU---UG- -5'
29476 5' -54.7 NC_006151.1 + 61037 0.67 0.843535
Target:  5'- uGCAcCAGCAGcCGGCGGUAGgGcCGGCc -3'
miRNA:   3'- -CGUcGUCGUC-GUCGUCGUCgUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 61266 0.71 0.634346
Target:  5'- cGCGGCGGCAgGCGGUAucguGCGGgGACGGa -3'
miRNA:   3'- -CGUCGUCGU-CGUCGU----CGUCgUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 63404 0.67 0.843535
Target:  5'- uCAGCAGCAcgggcacggcGCAgGCgGGCGGCAcgucgcACAGCg -3'
miRNA:   3'- cGUCGUCGU----------CGU-CG-UCGUCGU------UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 63472 0.7 0.655764
Target:  5'- uGCucGCAGgGGCGGCGGCGGCGc---- -3'
miRNA:   3'- -CGu-CGUCgUCGUCGUCGUCGUuguug -5'
29476 5' -54.7 NC_006151.1 + 64393 0.68 0.769911
Target:  5'- cCAGCccGCGGC-GCAGCAGCGuccACAGg -3'
miRNA:   3'- cGUCGu-CGUCGuCGUCGUCGU---UGUUg -5'
29476 5' -54.7 NC_006151.1 + 64901 0.69 0.719203
Target:  5'- -gAGCAcGCAGCGGCGcGCgAGCAccuccACGGCg -3'
miRNA:   3'- cgUCGU-CGUCGUCGU-CG-UCGU-----UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 66787 0.83 0.140525
Target:  5'- aCGGCGGCGGCGGCGGCGGggcccggggaCGACGACg -3'
miRNA:   3'- cGUCGUCGUCGUCGUCGUC----------GUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 66933 0.7 0.677099
Target:  5'- gGCGGgGGCgagGGCaaaGGCGGCGGCGggcGCGGCa -3'
miRNA:   3'- -CGUCgUCG---UCG---UCGUCGUCGU---UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 67467 0.67 0.855163
Target:  5'- cGCAG-AGCGcgcGCAGCAGCGGgCAcccgcacacgagcgcGCGGCu -3'
miRNA:   3'- -CGUCgUCGU---CGUCGUCGUC-GU---------------UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.