miRNA display CGI


Results 21 - 40 of 190 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 130733 0.69 0.739806
Target:  5'- cGCGGCcGCGGC-GCAGCGcCAcccACGACg -3'
miRNA:   3'- -CGUCGuCGUCGuCGUCGUcGU---UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 130580 0.72 0.591556
Target:  5'- uGCAucuGgAGguGguGCAGCGGCAcCAGCg -3'
miRNA:   3'- -CGU---CgUCguCguCGUCGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 130445 0.66 0.878594
Target:  5'- uGCAGCGGCGccagaaacauggcguGguGCAG-GGCGAUGGCc -3'
miRNA:   3'- -CGUCGUCGU---------------CguCGUCgUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 129828 0.7 0.687711
Target:  5'- aGCGcGCGGCGGC-GUAGCccAGCGACAc- -3'
miRNA:   3'- -CGU-CGUCGUCGuCGUCG--UCGUUGUug -5'
29476 5' -54.7 NC_006151.1 + 129752 0.66 0.875591
Target:  5'- cGCuGCAGCAcCAGC-GCgaaGGCGACGAg -3'
miRNA:   3'- -CGuCGUCGUcGUCGuCG---UCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 129704 0.68 0.798806
Target:  5'- cGCGGC-GCcgAGCAgGCAGUugAGCAGCAGg -3'
miRNA:   3'- -CGUCGuCG--UCGU-CGUCG--UCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 129223 0.67 0.834976
Target:  5'- cCAGCAgGCAGCuggcGCGGguGCGccccucggugacGCGGCg -3'
miRNA:   3'- cGUCGU-CGUCGu---CGUCguCGU------------UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 128044 0.98 0.012648
Target:  5'- cGCGGCAGCGGCGGCAGCGGCGGCuGCg -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCGUCGUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 127990 0.8 0.203106
Target:  5'- uGCGGCGGCuccGCgucgcggucgcggGGCGGCGGCGACGGCg -3'
miRNA:   3'- -CGUCGUCGu--CG-------------UCGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 126355 0.67 0.834976
Target:  5'- aGCAGCAGgAGCAcaaGGCGcGCAagaagaACAGCg -3'
miRNA:   3'- -CGUCGUCgUCGUcg-UCGU-CGU------UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 123895 0.68 0.789326
Target:  5'- cGCGGCcccgccguGCGGC-GCGGCGGCcgUGACg -3'
miRNA:   3'- -CGUCGu-------CGUCGuCGUCGUCGuuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 123110 0.69 0.719203
Target:  5'- cGCGGCgcucGGCGGCGagccuggcGCAGUgcgugcgcgAGCAGCGGCg -3'
miRNA:   3'- -CGUCG----UCGUCGU--------CGUCG---------UCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 122446 0.68 0.80812
Target:  5'- gGCGGaGGCGGCGuccaCGGCGGCGGCGGg -3'
miRNA:   3'- -CGUCgUCGUCGUc---GUCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 122313 0.69 0.729551
Target:  5'- cGCGGCAGCuGGCGGU-GC-GCGugGACc -3'
miRNA:   3'- -CGUCGUCG-UCGUCGuCGuCGUugUUG- -5'
29476 5' -54.7 NC_006151.1 + 121708 0.71 0.602226
Target:  5'- aGCGGCGGCucguGGCGGUccuggGGCAGguGCAGa -3'
miRNA:   3'- -CGUCGUCG----UCGUCG-----UCGUCguUGUUg -5'
29476 5' -54.7 NC_006151.1 + 121081 0.67 0.826215
Target:  5'- cGCAGacgGGCGGCGGCgccgGGCuGC-ACGACc -3'
miRNA:   3'- -CGUCg--UCGUCGUCG----UCGuCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 118874 0.87 0.072498
Target:  5'- -gAGCAGCGGCGGC-GCGGCGGCGACg -3'
miRNA:   3'- cgUCGUCGUCGUCGuCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 118786 0.67 0.860014
Target:  5'- cGCGGUGGCGcGCGGC-GCGGCG-CAc- -3'
miRNA:   3'- -CGUCGUCGU-CGUCGuCGUCGUuGUug -5'
29476 5' -54.7 NC_006151.1 + 118154 0.67 0.843535
Target:  5'- cGCGGCGGUGGCGccGCuGguGC-GCGGCc -3'
miRNA:   3'- -CGUCGUCGUCGU--CGuCguCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 117205 0.67 0.834976
Target:  5'- cGUAGUAGUAGaCGggcGCGGCGuCGACGACg -3'
miRNA:   3'- -CGUCGUCGUC-GU---CGUCGUcGUUGUUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.