miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 116432 0.75 0.384699
Target:  5'- uCGGCAGCuuCAGCuugucGGCGGCGACGGCg -3'
miRNA:   3'- cGUCGUCGucGUCG-----UCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 114171 0.68 0.80812
Target:  5'- cGCGGCccucgugcuGGCcuacguGCAGCAGCu-CAACAGCa -3'
miRNA:   3'- -CGUCG---------UCGu-----CGUCGUCGucGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 113851 0.66 0.875591
Target:  5'- uCGGCAGCuauguuugAGCGaCGGCGGCuccuGCGGCg -3'
miRNA:   3'- cGUCGUCG--------UCGUcGUCGUCGu---UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 113041 0.68 0.80812
Target:  5'- gGguGCugcGCGGCGGCGGagcGCGAgGACg -3'
miRNA:   3'- -CguCGu--CGUCGUCGUCgu-CGUUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 112012 0.71 0.649344
Target:  5'- cGCGGCGGCGGCgauuuucccGGCGGgAGCuggggccggcgggcgGGCGGCg -3'
miRNA:   3'- -CGUCGUCGUCG---------UCGUCgUCG---------------UUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 111514 0.68 0.807196
Target:  5'- cGCGGCaugcgcacgaAGCAGCucaccgacaucauGGCGcGCAGCGGCcGCg -3'
miRNA:   3'- -CGUCG----------UCGUCG-------------UCGU-CGUCGUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 109904 0.78 0.269271
Target:  5'- cGCcGCGGCGGCAGCAGCAGaGACc-- -3'
miRNA:   3'- -CGuCGUCGUCGUCGUCGUCgUUGuug -5'
29476 5' -54.7 NC_006151.1 + 109318 1.04 0.004716
Target:  5'- gGCGGCAGCAGCGGCGGCGGCAACAACc -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 109045 1.02 0.006492
Target:  5'- gGCGGCAGCAGCAGCAGCAGCuACAGCa -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 108675 0.69 0.719203
Target:  5'- uCAGCAGCcGgAGCGGCGGCccgAGCAc- -3'
miRNA:   3'- cGUCGUCGuCgUCGUCGUCG---UUGUug -5'
29476 5' -54.7 NC_006151.1 + 107657 0.76 0.34283
Target:  5'- aGCcGCAGCcGCAGCcGCAGCAGgGGCc -3'
miRNA:   3'- -CGuCGUCGuCGUCGuCGUCGUUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 105748 0.71 0.64506
Target:  5'- aGCAGCGcGUGGCGGCGcGCcugGGCGACcGCg -3'
miRNA:   3'- -CGUCGU-CGUCGUCGU-CG---UCGUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 105218 0.76 0.367551
Target:  5'- gGCGGaCAcGCuGCGGCAGCGGCuGACGGCc -3'
miRNA:   3'- -CGUC-GU-CGuCGUCGUCGUCG-UUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 104900 0.7 0.677099
Target:  5'- gGUGGUggacGCGGCGGCGGCGcGCGACcGCg -3'
miRNA:   3'- -CGUCGu---CGUCGUCGUCGU-CGUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 104843 0.73 0.507986
Target:  5'- cGCGGCGGaGGCGGaccaGGCcGCGGCGACg -3'
miRNA:   3'- -CGUCGUCgUCGUCg---UCGuCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 104806 0.67 0.851884
Target:  5'- uGC-GCcGCgaccuGGCGGCGGCGcGCGACGGCc -3'
miRNA:   3'- -CGuCGuCG-----UCGUCGUCGU-CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 104573 0.74 0.438263
Target:  5'- cGCGGCGcGCGGacgugcugcaggcCGGCGGCAGCcGCGGCg -3'
miRNA:   3'- -CGUCGU-CGUC-------------GUCGUCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 104274 0.7 0.66004
Target:  5'- cGCGGCGGCgggcccgccgcugcaGGCGcuGCAGCGGCugacguggcucGACGACu -3'
miRNA:   3'- -CGUCGUCG---------------UCGU--CGUCGUCG-----------UUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 104022 0.66 0.883025
Target:  5'- cGCGGCggAGguGgAGCGcgcGCAGCGcCAGCu -3'
miRNA:   3'- -CGUCG--UCguCgUCGU---CGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 103824 0.71 0.599022
Target:  5'- cGUGGCGGCGGCcguggagaugcucgGGCGGCuGCGcgcGCAGCc -3'
miRNA:   3'- -CGUCGUCGUCG--------------UCGUCGuCGU---UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.