miRNA display CGI


Results 61 - 80 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 103633 0.72 0.549279
Target:  5'- cGCGGUGGCGGCGGCgcuGGCGGaCGcggacACGGCg -3'
miRNA:   3'- -CGUCGUCGUCGUCG---UCGUC-GU-----UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 103331 0.73 0.518195
Target:  5'- cGCAcGCuGguGCAgGCGGC-GCAGCAGCg -3'
miRNA:   3'- -CGU-CGuCguCGU-CGUCGuCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 99562 0.67 0.826215
Target:  5'- cGCGGCGcgcGCGGCgcugcugcgcgaGGUGGCGGCGGCcgAGCg -3'
miRNA:   3'- -CGUCGU---CGUCG------------UCGUCGUCGUUG--UUG- -5'
29476 5' -54.7 NC_006151.1 + 97497 0.67 0.834976
Target:  5'- cGCAGCGccucGCGGCGGUGGCGcuGCGuguaGACa -3'
miRNA:   3'- -CGUCGU----CGUCGUCGUCGU--CGUug--UUG- -5'
29476 5' -54.7 NC_006151.1 + 97364 0.79 0.243615
Target:  5'- cGCGGCGGCGGCgGGC-GCGGCGGgGGCg -3'
miRNA:   3'- -CGUCGUCGUCG-UCGuCGUCGUUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 96717 0.79 0.231567
Target:  5'- gGCGGCGGCGGacgaggaGGCGGCGggcGCGACGACg -3'
miRNA:   3'- -CGUCGUCGUCg------UCGUCGU---CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 96473 0.68 0.80812
Target:  5'- cGCGGCuccGCAcGC-GCAGguGCAcCAGCu -3'
miRNA:   3'- -CGUCGu--CGU-CGuCGUCguCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 96219 0.72 0.591556
Target:  5'- cGUGGCGGCGGCcGCGGCgaGGCGcACAAa -3'
miRNA:   3'- -CGUCGUCGUCGuCGUCG--UCGU-UGUUg -5'
29476 5' -54.7 NC_006151.1 + 96040 0.71 0.602226
Target:  5'- cGCGGCAGgggguuCAGCAgGUAGCAGCuGGCGAg -3'
miRNA:   3'- -CGUCGUC------GUCGU-CGUCGUCG-UUGUUg -5'
29476 5' -54.7 NC_006151.1 + 95301 0.66 0.883025
Target:  5'- cGCGcGCGGCccGGC-GCAGC-GCGGCAAa -3'
miRNA:   3'- -CGU-CGUCG--UCGuCGUCGuCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 90899 0.81 0.178671
Target:  5'- cGCAGCcGCuGCAGCAGCGuCAGCAGCc -3'
miRNA:   3'- -CGUCGuCGuCGUCGUCGUcGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 90721 0.79 0.249832
Target:  5'- cGCAgGCGGCGGCGaCGGUGGCGGCGGCg -3'
miRNA:   3'- -CGU-CGUCGUCGUcGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 90671 0.68 0.77384
Target:  5'- gGCGGCGggccgcuugucccccGCGGCGGgGGCGGCGGacGCg -3'
miRNA:   3'- -CGUCGU---------------CGUCGUCgUCGUCGUUguUG- -5'
29476 5' -54.7 NC_006151.1 + 90452 0.68 0.779691
Target:  5'- uGCAGCGGguGgacucgAGCGcGCAGCGcCAGCa -3'
miRNA:   3'- -CGUCGUCguCg-----UCGU-CGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 90404 0.66 0.867919
Target:  5'- aCAGCAuGCAgGCGGCgAGgAGC-GCGACg -3'
miRNA:   3'- cGUCGU-CGU-CGUCG-UCgUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 89488 0.72 0.570322
Target:  5'- cGCGGCGGCGagccgguacgcGCGGguGUGGC-GCAGCg -3'
miRNA:   3'- -CGUCGUCGU-----------CGUCguCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 88063 0.68 0.80812
Target:  5'- gGCAGCugcgagGGCaggcccucgaGGCGGCAGguGUAGuCGACg -3'
miRNA:   3'- -CGUCG------UCG----------UCGUCGUCguCGUU-GUUG- -5'
29476 5' -54.7 NC_006151.1 + 87476 0.78 0.282896
Target:  5'- cCAGCAGCGGCAGCcGCcGCGGCcGCc -3'
miRNA:   3'- cGUCGUCGUCGUCGuCGuCGUUGuUG- -5'
29476 5' -54.7 NC_006151.1 + 87402 0.72 0.570322
Target:  5'- cGCAGCAGCcGguGguGguGCAGgccCAGCc -3'
miRNA:   3'- -CGUCGUCGuCguCguCguCGUU---GUUG- -5'
29476 5' -54.7 NC_006151.1 + 86833 0.67 0.825328
Target:  5'- uGCGGCcauGGCAGCcccgccgAGC-GCAGCGcccgGCGACu -3'
miRNA:   3'- -CGUCG---UCGUCG-------UCGuCGUCGU----UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.