miRNA display CGI


Results 81 - 100 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 85942 0.7 0.698273
Target:  5'- uGCuGCuGCAGCAGCcGCAccugcGCAACGcgGCg -3'
miRNA:   3'- -CGuCGuCGUCGUCGuCGU-----CGUUGU--UG- -5'
29476 5' -54.7 NC_006151.1 + 85636 0.74 0.433559
Target:  5'- cGCGGCgccAGCGGgGacgcgcccgccucgcGCAGCGGCGACGGCa -3'
miRNA:   3'- -CGUCG---UCGUCgU---------------CGUCGUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 84690 0.75 0.402368
Target:  5'- aGCAGCuGCGGCcgcuggAGCGGCAGguGgAGCg -3'
miRNA:   3'- -CGUCGuCGUCG------UCGUCGUCguUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 84416 0.74 0.448715
Target:  5'- cGCGGUgauaaGGCGGCGcGCGGCGGCGcGCGGCc -3'
miRNA:   3'- -CGUCG-----UCGUCGU-CGUCGUCGU-UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 83593 0.73 0.487833
Target:  5'- aGCGGgaccaGGCGcguguGCAGCAGCAGguACGGCg -3'
miRNA:   3'- -CGUCg----UCGU-----CGUCGUCGUCguUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 83051 0.78 0.276016
Target:  5'- cGC-GCAGCGGCAGCAGCuuGGCcACGAg -3'
miRNA:   3'- -CGuCGUCGUCGUCGUCG--UCGuUGUUg -5'
29476 5' -54.7 NC_006151.1 + 82652 0.66 0.8951
Target:  5'- uGCGGCgagGGCGGCccacccuGCGGCgcgccgcgggcgagGGCGGCGGCc -3'
miRNA:   3'- -CGUCG---UCGUCGu------CGUCG--------------UCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 82226 0.69 0.739806
Target:  5'- aGCGGCAGgaAGgAGC-GCAGC-GCGACg -3'
miRNA:   3'- -CGUCGUCg-UCgUCGuCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 81669 0.66 0.867919
Target:  5'- cGCAcGgAGCGGCGGUAcGCcuCGGCGACg -3'
miRNA:   3'- -CGU-CgUCGUCGUCGU-CGucGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 81609 0.8 0.193304
Target:  5'- cCGGCGcGCAGCAGCAG-GGCGACGGCg -3'
miRNA:   3'- cGUCGU-CGUCGUCGUCgUCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 81515 0.68 0.797865
Target:  5'- cGCGGCccgcgugAGCucGGCGGCcGCGGCGGCGc- -3'
miRNA:   3'- -CGUCG-------UCG--UCGUCGuCGUCGUUGUug -5'
29476 5' -54.7 NC_006151.1 + 81255 0.7 0.698273
Target:  5'- cGCAGgGGCAG-GGCgAGCAGCGccuCGGCg -3'
miRNA:   3'- -CGUCgUCGUCgUCG-UCGUCGUu--GUUG- -5'
29476 5' -54.7 NC_006151.1 + 76757 0.68 0.81726
Target:  5'- cGCGGCAGCAGgaaGGCgAGCGcgucgcagacGCAGuCGGCg -3'
miRNA:   3'- -CGUCGUCGUCg--UCG-UCGU----------CGUU-GUUG- -5'
29476 5' -54.7 NC_006151.1 + 76481 0.69 0.749958
Target:  5'- -gAGCGuGCuGCAGUAGguGCcgAGCAGCg -3'
miRNA:   3'- cgUCGU-CGuCGUCGUCguCG--UUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 76076 0.67 0.860014
Target:  5'- -gGGCGcCAGCAGCGaCAGgGGCGGCg -3'
miRNA:   3'- cgUCGUcGUCGUCGUcGUCgUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 75119 0.72 0.570322
Target:  5'- cCAGCAGCuggucGGCGGcCGGCGGC-GCGGCc -3'
miRNA:   3'- cGUCGUCG-----UCGUC-GUCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 74499 0.74 0.468064
Target:  5'- cGCAGUcccagaugAGCGGgGGCAGCAGCGugGc- -3'
miRNA:   3'- -CGUCG--------UCGUCgUCGUCGUCGUugUug -5'
29476 5' -54.7 NC_006151.1 + 72745 0.72 0.590491
Target:  5'- cGCAGCAGCGccgagucgcuggcGCA-CAGCGGCGGguACg -3'
miRNA:   3'- -CGUCGUCGU-------------CGUcGUCGUCGUUguUG- -5'
29476 5' -54.7 NC_006151.1 + 71980 0.76 0.334861
Target:  5'- uGCGGCGGgGGCAGCuGGUAGCGcCGGCc -3'
miRNA:   3'- -CGUCGUCgUCGUCG-UCGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 71774 0.84 0.116176
Target:  5'- uGCGGCAGCGGCGGCGGgGGCuGCcGCa -3'
miRNA:   3'- -CGUCGUCGUCGUCGUCgUCGuUGuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.