miRNA display CGI


Results 41 - 60 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 104022 0.66 0.883025
Target:  5'- cGCGGCggAGguGgAGCGcgcGCAGCGcCAGCu -3'
miRNA:   3'- -CGUCG--UCguCgUCGU---CGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 2352 0.66 0.883025
Target:  5'- cCAGCAGCGccGCGGC-GCAGaaggcgcGCAACu -3'
miRNA:   3'- cGUCGUCGU--CGUCGuCGUCgu-----UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 67732 0.66 0.889507
Target:  5'- cGCGGCGcacaggcacggcGCGGCGGCcccgucgGGguGCGGCGucGCg -3'
miRNA:   3'- -CGUCGU------------CGUCGUCG-------UCguCGUUGU--UG- -5'
29476 5' -54.7 NC_006151.1 + 59941 0.66 0.890215
Target:  5'- uCAGCGGCGGCucGCAGCccucgAGCGcCAcccGCa -3'
miRNA:   3'- cGUCGUCGUCGu-CGUCG-----UCGUuGU---UG- -5'
29476 5' -54.7 NC_006151.1 + 82652 0.66 0.8951
Target:  5'- uGCGGCgagGGCGGCccacccuGCGGCgcgccgcgggcgagGGCGGCGGCc -3'
miRNA:   3'- -CGUCG---UCGUCGu------CGUCG--------------UCGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 81669 0.66 0.867919
Target:  5'- cGCAcGgAGCGGCGGUAcGCcuCGGCGACg -3'
miRNA:   3'- -CGU-CgUCGUCGUCGU-CGucGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 57283 0.66 0.867919
Target:  5'- cGCAGCAGgGcguccagcGCGGCcuuGGCGGC-GCGGCc -3'
miRNA:   3'- -CGUCGUCgU--------CGUCG---UCGUCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 61037 0.67 0.843535
Target:  5'- uGCAcCAGCAGcCGGCGGUAGgGcCGGCc -3'
miRNA:   3'- -CGUcGUCGUC-GUCGUCGUCgUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 21608 0.67 0.843535
Target:  5'- cGUGGCGGCGGCGuaGGCccGCGGgAGCg -3'
miRNA:   3'- -CGUCGUCGUCGUcgUCGu-CGUUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 118154 0.67 0.843535
Target:  5'- cGCGGCGGUGGCGccGCuGguGC-GCGGCc -3'
miRNA:   3'- -CGUCGUCGUCGU--CGuCguCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 23034 0.67 0.843535
Target:  5'- gGCGGCgaagaAGCgGGCGGCcGCGGCGagcccACGACc -3'
miRNA:   3'- -CGUCG-----UCG-UCGUCGuCGUCGU-----UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 38379 0.67 0.843535
Target:  5'- cCAGCGcCGGCGcCGGCGGCGGCGGg -3'
miRNA:   3'- cGUCGUcGUCGUcGUCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 36018 0.67 0.851884
Target:  5'- aCGGCGGCAGCcagGGCuccCGGCGccGCGGCu -3'
miRNA:   3'- cGUCGUCGUCG---UCGuc-GUCGU--UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 68761 0.67 0.851884
Target:  5'- cGUAGcCGGCGGUGGCGcGC-GCGGCGAg -3'
miRNA:   3'- -CGUC-GUCGUCGUCGU-CGuCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 104806 0.67 0.851884
Target:  5'- uGC-GCcGCgaccuGGCGGCGGCGcGCGACGGCc -3'
miRNA:   3'- -CGuCGuCG-----UCGUCGUCGU-CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 67467 0.67 0.855163
Target:  5'- cGCAG-AGCGcgcGCAGCAGCGGgCAcccgcacacgagcgcGCGGCu -3'
miRNA:   3'- -CGUCgUCGU---CGUCGUCGUC-GU---------------UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 76076 0.67 0.860014
Target:  5'- -gGGCGcCAGCAGCGaCAGgGGCGGCg -3'
miRNA:   3'- cgUCGUcGUCGUCGUcGUCgUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 118786 0.67 0.860014
Target:  5'- cGCGGUGGCGcGCGGC-GCGGCG-CAc- -3'
miRNA:   3'- -CGUCGUCGU-CGUCGuCGUCGUuGUug -5'
29476 5' -54.7 NC_006151.1 + 44581 0.66 0.867919
Target:  5'- aGCuccGCuGCAGCGGCGGaC-GCAuCAGCg -3'
miRNA:   3'- -CGu--CGuCGUCGUCGUC-GuCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 130933 0.66 0.867919
Target:  5'- cGCGGgGGCGGgGGCGGCGGgGGg--- -3'
miRNA:   3'- -CGUCgUCGUCgUCGUCGUCgUUguug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.