miRNA display CGI


Results 21 - 40 of 190 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29476 5' -54.7 NC_006151.1 + 67467 0.67 0.855163
Target:  5'- cGCAG-AGCGcgcGCAGCAGCGGgCAcccgcacacgagcgcGCGGCu -3'
miRNA:   3'- -CGUCgUCGU---CGUCGUCGUC-GU---------------UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 104806 0.67 0.851884
Target:  5'- uGC-GCcGCgaccuGGCGGCGGCGcGCGACGGCc -3'
miRNA:   3'- -CGuCGuCG-----UCGUCGUCGU-CGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 68761 0.67 0.851884
Target:  5'- cGUAGcCGGCGGUGGCGcGC-GCGGCGAg -3'
miRNA:   3'- -CGUC-GUCGUCGUCGU-CGuCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 36018 0.67 0.851884
Target:  5'- aCGGCGGCAGCcagGGCuccCGGCGccGCGGCu -3'
miRNA:   3'- cGUCGUCGUCG---UCGuc-GUCGU--UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 63404 0.67 0.843535
Target:  5'- uCAGCAGCAcgggcacggcGCAgGCgGGCGGCAcgucgcACAGCg -3'
miRNA:   3'- cGUCGUCGU----------CGU-CG-UCGUCGU------UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 61037 0.67 0.843535
Target:  5'- uGCAcCAGCAGcCGGCGGUAGgGcCGGCc -3'
miRNA:   3'- -CGUcGUCGUC-GUCGUCGUCgUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 21608 0.67 0.843535
Target:  5'- cGUGGCGGCGGCGuaGGCccGCGGgAGCg -3'
miRNA:   3'- -CGUCGUCGUCGUcgUCGu-CGUUgUUG- -5'
29476 5' -54.7 NC_006151.1 + 118154 0.67 0.843535
Target:  5'- cGCGGCGGUGGCGccGCuGguGC-GCGGCc -3'
miRNA:   3'- -CGUCGUCGUCGU--CGuCguCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 23034 0.67 0.843535
Target:  5'- gGCGGCgaagaAGCgGGCGGCcGCGGCGagcccACGACc -3'
miRNA:   3'- -CGUCG-----UCG-UCGUCGuCGUCGU-----UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 38379 0.67 0.843535
Target:  5'- cCAGCGcCGGCGcCGGCGGCGGCGGg -3'
miRNA:   3'- cGUCGUcGUCGUcGUCGUCGUUGUUg -5'
29476 5' -54.7 NC_006151.1 + 126355 0.67 0.834976
Target:  5'- aGCAGCAGgAGCAcaaGGCGcGCAagaagaACAGCg -3'
miRNA:   3'- -CGUCGUCgUCGUcg-UCGU-CGU------UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 117205 0.67 0.834976
Target:  5'- cGUAGUAGUAGaCGggcGCGGCGuCGACGACg -3'
miRNA:   3'- -CGUCGUCGUC-GU---CGUCGUcGUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 129223 0.67 0.834976
Target:  5'- cCAGCAgGCAGCuggcGCGGguGCGccccucggugacGCGGCg -3'
miRNA:   3'- cGUCGU-CGUCGu---CGUCguCGU------------UGUUG- -5'
29476 5' -54.7 NC_006151.1 + 21335 0.67 0.834976
Target:  5'- cGCGGCGGgGGUccGCGGCuGgAACGGCu -3'
miRNA:   3'- -CGUCGUCgUCGu-CGUCGuCgUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 39339 0.67 0.834976
Target:  5'- cGCGGCucGGC-GCGGC-GCGGCGcCGGCu -3'
miRNA:   3'- -CGUCG--UCGuCGUCGuCGUCGUuGUUG- -5'
29476 5' -54.7 NC_006151.1 + 97497 0.67 0.834976
Target:  5'- cGCAGCGccucGCGGCGGUGGCGcuGCGuguaGACa -3'
miRNA:   3'- -CGUCGU----CGUCGUCGUCGU--CGUug--UUG- -5'
29476 5' -54.7 NC_006151.1 + 121081 0.67 0.826215
Target:  5'- cGCAGacgGGCGGCGGCgccgGGCuGC-ACGACc -3'
miRNA:   3'- -CGUCg--UCGUCGUCG----UCGuCGuUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 99562 0.67 0.826215
Target:  5'- cGCGGCGcgcGCGGCgcugcugcgcgaGGUGGCGGCGGCcgAGCg -3'
miRNA:   3'- -CGUCGU---CGUCG------------UCGUCGUCGUUG--UUG- -5'
29476 5' -54.7 NC_006151.1 + 53381 0.67 0.826215
Target:  5'- cGCGGCGuugauCAGCcaccAGCAGUAGaCGACGGCc -3'
miRNA:   3'- -CGUCGUc----GUCG----UCGUCGUC-GUUGUUG- -5'
29476 5' -54.7 NC_006151.1 + 86833 0.67 0.825328
Target:  5'- uGCGGCcauGGCAGCcccgccgAGC-GCAGCGcccgGCGACu -3'
miRNA:   3'- -CGUCG---UCGUCG-------UCGuCGUCGU----UGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.