miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29477 3' -56.4 NC_006151.1 + 91126 0.66 0.911378
Target:  5'- -cGCCACGG-CGgcGAgCUugGCCACCuGGg -3'
miRNA:   3'- acCGGUGCCaGCuaCU-GA--UGGUGG-CC- -5'
29477 3' -56.4 NC_006151.1 + 118178 0.66 0.911378
Target:  5'- cGGCCugACcGUCGAggccGGCU-UCGCCGGg -3'
miRNA:   3'- aCCGG--UGcCAGCUa---CUGAuGGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 130886 0.66 0.911378
Target:  5'- cGGCgGCGGUgGA-GGCgGCgGCCGu -3'
miRNA:   3'- aCCGgUGCCAgCUaCUGaUGgUGGCc -5'
29477 3' -56.4 NC_006151.1 + 2111 0.66 0.911378
Target:  5'- gGGCCGCGGg-GccGGCcgucGCCGCCGcGg -3'
miRNA:   3'- aCCGGUGCCagCuaCUGa---UGGUGGC-C- -5'
29477 3' -56.4 NC_006151.1 + 25291 0.66 0.911378
Target:  5'- uUGGCCGCGGggacgugggCGAacgggugcggugUGAaugAgCGCCGGg -3'
miRNA:   3'- -ACCGGUGCCa--------GCU------------ACUga-UgGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 59809 0.66 0.909595
Target:  5'- gUGGCCACcucgccgcuguccgCGAUGucgGCcGCCACCGGc -3'
miRNA:   3'- -ACCGGUGcca-----------GCUAC---UGaUGGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 29431 0.66 0.908996
Target:  5'- gUGGCCGCGGggggcggCGGggagagggGACgcggagggagcggGCgCGCCGGg -3'
miRNA:   3'- -ACCGGUGCCa------GCUa-------CUGa------------UG-GUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 23425 0.66 0.905355
Target:  5'- cGGCCGUGGgggCGAUGGgUgggagggugGCC-CCGGg -3'
miRNA:   3'- aCCGGUGCCa--GCUACUgA---------UGGuGGCC- -5'
29477 3' -56.4 NC_006151.1 + 85696 0.66 0.905355
Target:  5'- cUGGcCCACuacGUCGucGUGGcCUACCGCgCGGa -3'
miRNA:   3'- -ACC-GGUGc--CAGC--UACU-GAUGGUG-GCC- -5'
29477 3' -56.4 NC_006151.1 + 91557 0.66 0.905355
Target:  5'- cGGCCAgCGGggCGAUGGCgGCgCGCgCGu -3'
miRNA:   3'- aCCGGU-GCCa-GCUACUGaUG-GUG-GCc -5'
29477 3' -56.4 NC_006151.1 + 17820 0.66 0.905355
Target:  5'- cUGGgCGCGG-CGGggcgGGCgGCCACCa- -3'
miRNA:   3'- -ACCgGUGCCaGCUa---CUGaUGGUGGcc -5'
29477 3' -56.4 NC_006151.1 + 71776 0.66 0.905355
Target:  5'- cGGCaGCGGcggCGggGGCUGCCGCa-- -3'
miRNA:   3'- aCCGgUGCCa--GCuaCUGAUGGUGgcc -5'
29477 3' -56.4 NC_006151.1 + 138612 0.66 0.905355
Target:  5'- -uGCCGCucGG-CGAgGAC-GCCGCCGGg -3'
miRNA:   3'- acCGGUG--CCaGCUaCUGaUGGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 130284 0.66 0.899103
Target:  5'- aGGCCGCGGgcgcgCGccGGCcgACgGCgCGGa -3'
miRNA:   3'- aCCGGUGCCa----GCuaCUGa-UGgUG-GCC- -5'
29477 3' -56.4 NC_006151.1 + 8985 0.66 0.899103
Target:  5'- gGGUCG-GG-CGAUGGCcGCCGCCa- -3'
miRNA:   3'- aCCGGUgCCaGCUACUGaUGGUGGcc -5'
29477 3' -56.4 NC_006151.1 + 36129 0.66 0.899103
Target:  5'- cGGCCGCGGcCGGaGccACgagGCCGCCc- -3'
miRNA:   3'- aCCGGUGCCaGCUaC--UGa--UGGUGGcc -5'
29477 3' -56.4 NC_006151.1 + 50719 0.66 0.899103
Target:  5'- cGGCCGCcccGG-CGGUccaGCUGCC-CCGGc -3'
miRNA:   3'- aCCGGUG---CCaGCUAc--UGAUGGuGGCC- -5'
29477 3' -56.4 NC_006151.1 + 69688 0.66 0.899103
Target:  5'- cUGcGCCuCGccGUCGAuggUGGCcGCCGCCGGn -3'
miRNA:   3'- -AC-CGGuGC--CAGCU---ACUGaUGGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 71069 0.66 0.899103
Target:  5'- cGGCCGUGGUCuu---CUACCACCa- -3'
miRNA:   3'- aCCGGUGCCAGcuacuGAUGGUGGcc -5'
29477 3' -56.4 NC_006151.1 + 53941 0.66 0.892625
Target:  5'- -cGCCGCGG-CGAggGACUugaaccacGCCAgCGGc -3'
miRNA:   3'- acCGGUGCCaGCUa-CUGA--------UGGUgGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.