miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29477 3' -56.4 NC_006151.1 + 2111 0.66 0.911378
Target:  5'- gGGCCGCGGg-GccGGCcgucGCCGCCGcGg -3'
miRNA:   3'- aCCGGUGCCagCuaCUGa---UGGUGGC-C- -5'
29477 3' -56.4 NC_006151.1 + 2402 0.68 0.824848
Target:  5'- gGGCCGCGGagcUCGgcGAg-GCC-CCGGc -3'
miRNA:   3'- aCCGGUGCC---AGCuaCUgaUGGuGGCC- -5'
29477 3' -56.4 NC_006151.1 + 3271 0.7 0.714169
Target:  5'- cGGCgCGCGG-CGAUGuGCgccaggGCgGCCGGg -3'
miRNA:   3'- aCCG-GUGCCaGCUAC-UGa-----UGgUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 3405 0.7 0.733713
Target:  5'- gGGCCGCGG-CGuGUGGgUcUCGCCGGc -3'
miRNA:   3'- aCCGGUGCCaGC-UACUgAuGGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 4792 0.67 0.864522
Target:  5'- cGGCCGCGGcgCGGUaGCggGCCGCgGc -3'
miRNA:   3'- aCCGGUGCCa-GCUAcUGa-UGGUGgCc -5'
29477 3' -56.4 NC_006151.1 + 5080 0.69 0.74336
Target:  5'- gGGCCGCGGggccgCGGcgGGC-GCCGgCGGa -3'
miRNA:   3'- aCCGGUGCCa----GCUa-CUGaUGGUgGCC- -5'
29477 3' -56.4 NC_006151.1 + 5119 0.67 0.856972
Target:  5'- cGGCC-CGG-CGcgGGCgaguggGgCGCCGGg -3'
miRNA:   3'- aCCGGuGCCaGCuaCUGa-----UgGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 5336 0.68 0.80773
Target:  5'- cGGCCGCGG-CGGagGGCgcCCucuCCGGc -3'
miRNA:   3'- aCCGGUGCCaGCUa-CUGauGGu--GGCC- -5'
29477 3' -56.4 NC_006151.1 + 5732 0.66 0.892625
Target:  5'- gGcGCCGgGGUcCGA-GGCcgcGCCGCCGGc -3'
miRNA:   3'- aC-CGGUgCCA-GCUaCUGa--UGGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 5850 0.74 0.467215
Target:  5'- aGGCUGCGGagGggGACgagcgcccgggGCCGCCGGg -3'
miRNA:   3'- aCCGGUGCCagCuaCUGa----------UGGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 6140 0.69 0.762359
Target:  5'- cGGCCGCGGccgCGAgGACggcgGCC-UCGGc -3'
miRNA:   3'- aCCGGUGCCa--GCUaCUGa---UGGuGGCC- -5'
29477 3' -56.4 NC_006151.1 + 6228 0.71 0.664268
Target:  5'- gGaGCCGCGGcgcCGGgagcccUGGCUGCCGCCGu -3'
miRNA:   3'- aC-CGGUGCCa--GCU------ACUGAUGGUGGCc -5'
29477 3' -56.4 NC_006151.1 + 6290 0.69 0.762359
Target:  5'- cGGCCGCGG-CGgcGGCcGCCaggaGCUGGc -3'
miRNA:   3'- aCCGGUGCCaGCuaCUGaUGG----UGGCC- -5'
29477 3' -56.4 NC_006151.1 + 6359 0.67 0.871143
Target:  5'- cGGCCAUGGucUCGAUcGGggucuuuCUGCCugagcgagGCCGGg -3'
miRNA:   3'- aCCGGUGCC--AGCUA-CU-------GAUGG--------UGGCC- -5'
29477 3' -56.4 NC_006151.1 + 6505 0.7 0.72398
Target:  5'- gGGCguCcGUCGAgGGCUgauaGCCGCCGGa -3'
miRNA:   3'- aCCGguGcCAGCUaCUGA----UGGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 6778 0.67 0.841282
Target:  5'- -uGCC-CGGcccaaGAUGGCgGCCGCCGGc -3'
miRNA:   3'- acCGGuGCCag---CUACUGaUGGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 8329 0.71 0.654178
Target:  5'- gGGCgCGCGGgccUCGAUcGCgcCCGCCGGa -3'
miRNA:   3'- aCCG-GUGCC---AGCUAcUGauGGUGGCC- -5'
29477 3' -56.4 NC_006151.1 + 8985 0.66 0.899103
Target:  5'- gGGUCG-GG-CGAUGGCcGCCGCCa- -3'
miRNA:   3'- aCCGGUgCCaGCUACUGaUGGUGGcc -5'
29477 3' -56.4 NC_006151.1 + 17820 0.66 0.905355
Target:  5'- cUGGgCGCGG-CGGggcgGGCgGCCACCa- -3'
miRNA:   3'- -ACCgGUGCCaGCUa---CUGaUGGUGGcc -5'
29477 3' -56.4 NC_006151.1 + 19376 0.69 0.752912
Target:  5'- aGGCC-CGuGUCGuugGGCguggcCCGCCGGa -3'
miRNA:   3'- aCCGGuGC-CAGCua-CUGau---GGUGGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.