miRNA display CGI


Results 1 - 20 of 751 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29477 5' -63.1 NC_006151.1 + 134252 0.66 0.639353
Target:  5'- gGGCUuucgcGGCGAGgugcaggcgauuguaGCcccgGGCCGCCCacgGGCGCa -3'
miRNA:   3'- -CCGG-----UUGCUC---------------UG----CCGGCGGG---CCGCGg -5'
29477 5' -63.1 NC_006151.1 + 8003 0.66 0.635481
Target:  5'- gGGCgGGCGGGAgggGGCgCGagaCCGGCucgGCCu -3'
miRNA:   3'- -CCGgUUGCUCUg--CCG-GCg--GGCCG---CGG- -5'
29477 5' -63.1 NC_006151.1 + 88078 0.66 0.635481
Target:  5'- aGGCCcuCGAGGCGGCagguguaGUCgaCGG-GCCc -3'
miRNA:   3'- -CCGGuuGCUCUGCCGg------CGG--GCCgCGG- -5'
29477 5' -63.1 NC_006151.1 + 131903 0.66 0.635481
Target:  5'- aGGgCGACgGGGGCGGCagcaggGCCuccgCGGUGCUg -3'
miRNA:   3'- -CCgGUUG-CUCUGCCGg-----CGG----GCCGCGG- -5'
29477 5' -63.1 NC_006151.1 + 10196 0.66 0.635481
Target:  5'- cGGUCGcggcGCGGGcgGCGGCUGCagaGGCGgCu -3'
miRNA:   3'- -CCGGU----UGCUC--UGCCGGCGgg-CCGCgG- -5'
29477 5' -63.1 NC_006151.1 + 25307 0.66 0.635481
Target:  5'- gGGCgAACGGGuGCGGUgugaaugagCGCCgGGacgGCCg -3'
miRNA:   3'- -CCGgUUGCUC-UGCCG---------GCGGgCCg--CGG- -5'
29477 5' -63.1 NC_006151.1 + 28241 0.66 0.635481
Target:  5'- gGGCCGACGGGcCcaUUGgCCGGgGCCu -3'
miRNA:   3'- -CCGGUUGCUCuGccGGCgGGCCgCGG- -5'
29477 5' -63.1 NC_006151.1 + 56582 0.66 0.635481
Target:  5'- cGcCCGACGGGcugguGCGGaCgCGCCCcGGCGgCg -3'
miRNA:   3'- cC-GGUUGCUC-----UGCC-G-GCGGG-CCGCgG- -5'
29477 5' -63.1 NC_006151.1 + 67855 0.66 0.635481
Target:  5'- -cCCGGCGAGcCGG-CGCCgaggUGGCGCg -3'
miRNA:   3'- ccGGUUGCUCuGCCgGCGG----GCCGCGg -5'
29477 5' -63.1 NC_006151.1 + 94660 0.66 0.635481
Target:  5'- uGGCCA-----GCGGgUGCCCGGCGg- -3'
miRNA:   3'- -CCGGUugcucUGCCgGCGGGCCGCgg -5'
29477 5' -63.1 NC_006151.1 + 134412 0.66 0.635481
Target:  5'- uGCCcgcGCGAGcUGGUgcUGCCCcccgggGGCGCCg -3'
miRNA:   3'- cCGGu--UGCUCuGCCG--GCGGG------CCGCGG- -5'
29477 5' -63.1 NC_006151.1 + 75446 0.66 0.635481
Target:  5'- uGCCGGCGuGGCGcGCguagCGgUCGGCgGCCg -3'
miRNA:   3'- cCGGUUGCuCUGC-CG----GCgGGCCG-CGG- -5'
29477 5' -63.1 NC_006151.1 + 58405 0.66 0.635481
Target:  5'- cGGCCAuggcGCGcAGcUGGgCGUgCGGCaGCCa -3'
miRNA:   3'- -CCGGU----UGC-UCuGCCgGCGgGCCG-CGG- -5'
29477 5' -63.1 NC_006151.1 + 27604 0.66 0.635481
Target:  5'- cGCCGACccGGAacCGGaCCcgaGCCCGGcCGCCc -3'
miRNA:   3'- cCGGUUGc-UCU--GCC-GG---CGGGCC-GCGG- -5'
29477 5' -63.1 NC_006151.1 + 112044 0.66 0.635481
Target:  5'- gGGCCGGCGggcGGGCGGCgGCggugguggUGGgGCUg -3'
miRNA:   3'- -CCGGUUGC---UCUGCCGgCGg-------GCCgCGG- -5'
29477 5' -63.1 NC_006151.1 + 102420 0.66 0.635481
Target:  5'- cGGCCcGCGAacgaGGCCauGCaCCGgGCGCUg -3'
miRNA:   3'- -CCGGuUGCUcug-CCGG--CG-GGC-CGCGG- -5'
29477 5' -63.1 NC_006151.1 + 99821 0.66 0.635481
Target:  5'- cGCCcuucuucguCGuGACGGCCGUggCCGaCGCCu -3'
miRNA:   3'- cCGGuu-------GCuCUGCCGGCG--GGCcGCGG- -5'
29477 5' -63.1 NC_006151.1 + 38928 0.66 0.632577
Target:  5'- uGGaCCAG-GAGGucuuccccgaacucUGG-CGCCCGGCGCUc -3'
miRNA:   3'- -CC-GGUUgCUCU--------------GCCgGCGGGCCGCGG- -5'
29477 5' -63.1 NC_006151.1 + 19812 0.66 0.629674
Target:  5'- cGGCCGAgGGacucgggaccucgguGACGGg-GCCCGGgGUCg -3'
miRNA:   3'- -CCGGUUgCU---------------CUGCCggCGGGCCgCGG- -5'
29477 5' -63.1 NC_006151.1 + 105136 0.66 0.625802
Target:  5'- cGCUGACGAcgcgcgucGACGGCCG-CgGGC-CCa -3'
miRNA:   3'- cCGGUUGCU--------CUGCCGGCgGgCCGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.