miRNA display CGI


Results 1 - 20 of 751 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29477 5' -63.1 NC_006151.1 + 663 0.7 0.391012
Target:  5'- cGGCCGggGCGGGcuccGCGGaUCGCaUCGGCGCg -3'
miRNA:   3'- -CCGGU--UGCUC----UGCC-GGCG-GGCCGCGg -5'
29477 5' -63.1 NC_006151.1 + 725 0.67 0.520948
Target:  5'- gGGUCcGCG-GGCGGgggcuuCCGCUccgCGGCGCCc -3'
miRNA:   3'- -CCGGuUGCuCUGCC------GGCGG---GCCGCGG- -5'
29477 5' -63.1 NC_006151.1 + 1680 0.68 0.50253
Target:  5'- cGCCGcCGAGcccuccgccGCGGCCGCC-GcCGCCg -3'
miRNA:   3'- cCGGUuGCUC---------UGCCGGCGGgCcGCGG- -5'
29477 5' -63.1 NC_006151.1 + 1804 0.69 0.440533
Target:  5'- gGGCCGGgGAGGCaGgCGCCgGggaggcaaGCGCCg -3'
miRNA:   3'- -CCGGUUgCUCUGcCgGCGGgC--------CGCGG- -5'
29477 5' -63.1 NC_006151.1 + 1842 0.74 0.221382
Target:  5'- gGGCCGAgGGGACcgaGGCCGCCgccgCGGaCGCa -3'
miRNA:   3'- -CCGGUUgCUCUG---CCGGCGG----GCC-GCGg -5'
29477 5' -63.1 NC_006151.1 + 2111 0.74 0.221382
Target:  5'- gGGCC-GCGGGGCcggccgucGCCGCCgCGGaCGCCg -3'
miRNA:   3'- -CCGGuUGCUCUGc-------CGGCGG-GCC-GCGG- -5'
29477 5' -63.1 NC_006151.1 + 2172 0.66 0.616127
Target:  5'- cGCCG--GGGcCGGC--CCCGGCGCCc -3'
miRNA:   3'- cCGGUugCUCuGCCGgcGGGCCGCGG- -5'
29477 5' -63.1 NC_006151.1 + 2206 0.71 0.352619
Target:  5'- gGGCCggUGGGucuccACGGCgCcCCCGGCGgCg -3'
miRNA:   3'- -CCGGuuGCUC-----UGCCG-GcGGGCCGCgG- -5'
29477 5' -63.1 NC_006151.1 + 2280 0.81 0.07755
Target:  5'- cGGCCGGCGGGGCGcCCGCggcggcgaCGGCGCCc -3'
miRNA:   3'- -CCGGUUGCUCUGCcGGCGg-------GCCGCGG- -5'
29477 5' -63.1 NC_006151.1 + 2324 0.75 0.187908
Target:  5'- -aCCAGCGGGGCGGCC--UCGGCGUCg -3'
miRNA:   3'- ccGGUUGCUCUGCCGGcgGGCCGCGG- -5'
29477 5' -63.1 NC_006151.1 + 2385 0.66 0.616127
Target:  5'- cGGCCGGCa----GGCC-CUCGGgGCCg -3'
miRNA:   3'- -CCGGUUGcucugCCGGcGGGCCgCGG- -5'
29477 5' -63.1 NC_006151.1 + 2429 0.74 0.216306
Target:  5'- cGGCCGcaggagACGaAGACgGGCCGCagcggGGCGCCg -3'
miRNA:   3'- -CCGGU------UGC-UCUG-CCGGCGgg---CCGCGG- -5'
29477 5' -63.1 NC_006151.1 + 2472 0.73 0.259803
Target:  5'- -cCCAGCG-GuuGGCCGCgCGGUGCCc -3'
miRNA:   3'- ccGGUUGCuCugCCGGCGgGCCGCGG- -5'
29477 5' -63.1 NC_006151.1 + 2608 0.74 0.216306
Target:  5'- cGGCggCAGCGGGACcggGGUCcgggGCCCGGCGCg -3'
miRNA:   3'- -CCG--GUUGCUCUG---CCGG----CGGGCCGCGg -5'
29477 5' -63.1 NC_006151.1 + 2747 0.66 0.606464
Target:  5'- gGGCCcacgAugGAGcuagaguccagcACGGCCGCgCGGaGCUc -3'
miRNA:   3'- -CCGG----UugCUC------------UGCCGGCGgGCCgCGG- -5'
29477 5' -63.1 NC_006151.1 + 2800 0.7 0.360081
Target:  5'- gGGCCAGCGcacggcgcacuGGGCGGCCggGUCCaGGCGg- -3'
miRNA:   3'- -CCGGUUGC-----------UCUGCCGG--CGGG-CCGCgg -5'
29477 5' -63.1 NC_006151.1 + 3004 0.68 0.475456
Target:  5'- uGGgCGuUGAGGCGGCCGaugucggGGCGCCc -3'
miRNA:   3'- -CCgGUuGCUCUGCCGGCggg----CCGCGG- -5'
29477 5' -63.1 NC_006151.1 + 3092 0.74 0.216306
Target:  5'- cGGCgAGCagcgccGAGA-GGCCGCCgCGGCGCg -3'
miRNA:   3'- -CCGgUUG------CUCUgCCGGCGG-GCCGCGg -5'
29477 5' -63.1 NC_006151.1 + 3131 0.71 0.337309
Target:  5'- aGGCCGggcGCGGGGCGcCCucggcggGCUCGGCGCa -3'
miRNA:   3'- -CCGGU---UGCUCUGCcGG-------CGGGCCGCGg -5'
29477 5' -63.1 NC_006151.1 + 3242 0.68 0.511704
Target:  5'- aGG-CGGCGcGGCGGCggagcggggCGCCgCGGCGCg -3'
miRNA:   3'- -CCgGUUGCuCUGCCG---------GCGG-GCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.