miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29478 3' -55.5 NC_006151.1 + 101640 0.66 0.944062
Target:  5'- cGACcaguucGCCGCCGUgccCGCGcucuacGGCGUGGg -3'
miRNA:   3'- cCUGuac---UGGCGGCA---GUGC------UCGCACC- -5'
29478 3' -55.5 NC_006151.1 + 76991 0.66 0.944062
Target:  5'- cGGugAgGAgCGCCGcgaggguggccCGCGAGcCGUGGa -3'
miRNA:   3'- -CCugUaCUgGCGGCa----------GUGCUC-GCACC- -5'
29478 3' -55.5 NC_006151.1 + 3871 0.66 0.944062
Target:  5'- gGGGCGcccGCCGCCGccggCGCcGGCGcUGGg -3'
miRNA:   3'- -CCUGUac-UGGCGGCa---GUGcUCGC-ACC- -5'
29478 3' -55.5 NC_006151.1 + 138770 0.66 0.944062
Target:  5'- gGGACGugcacuuucgccUGGCgGCCGUCGCGuGGCu--- -3'
miRNA:   3'- -CCUGU------------ACUGgCGGCAGUGC-UCGcacc -5'
29478 3' -55.5 NC_006151.1 + 115828 0.66 0.944062
Target:  5'- -cGCAUGGCCaGCCaGUCGCGcAGCa-GGa -3'
miRNA:   3'- ccUGUACUGG-CGG-CAGUGC-UCGcaCC- -5'
29478 3' -55.5 NC_006151.1 + 76664 0.66 0.944062
Target:  5'- gGGcGCGUGugCGCgGUCGCugggGAGCaggGGg -3'
miRNA:   3'- -CC-UGUACugGCGgCAGUG----CUCGca-CC- -5'
29478 3' -55.5 NC_006151.1 + 139925 0.66 0.943172
Target:  5'- cGGGCucgucgccgugGGCCGCCGUCcuCGAGUucGGc -3'
miRNA:   3'- -CCUGua---------CUGGCGGCAGu-GCUCGcaCC- -5'
29478 3' -55.5 NC_006151.1 + 130554 0.66 0.939517
Target:  5'- aGGGCGgcgcGCUGCCGcccCACGAGUGcaucUGGa -3'
miRNA:   3'- -CCUGUac--UGGCGGCa--GUGCUCGC----ACC- -5'
29478 3' -55.5 NC_006151.1 + 89143 0.66 0.934741
Target:  5'- gGGGCGUcgaGACCGCgcccgccucgggCGagGCGGGCGcGGg -3'
miRNA:   3'- -CCUGUA---CUGGCG------------GCagUGCUCGCaCC- -5'
29478 3' -55.5 NC_006151.1 + 132824 0.66 0.930243
Target:  5'- cGGGC-UGGCCGCCcgcgggacggccacCACGGGCGgccGGc -3'
miRNA:   3'- -CCUGuACUGGCGGca------------GUGCUCGCa--CC- -5'
29478 3' -55.5 NC_006151.1 + 19389 0.66 0.929732
Target:  5'- uGGGCGUGGcCCGCCGgacggUCAgGuGCGg-- -3'
miRNA:   3'- -CCUGUACU-GGCGGC-----AGUgCuCGCacc -5'
29478 3' -55.5 NC_006151.1 + 31185 0.66 0.929732
Target:  5'- uGGCAcGGuCCGCCG-CAC-AGUGUGGc -3'
miRNA:   3'- cCUGUaCU-GGCGGCaGUGcUCGCACC- -5'
29478 3' -55.5 NC_006151.1 + 80914 0.66 0.929732
Target:  5'- uGACGUcGCCGCCGU-GC-AGCGUcGGg -3'
miRNA:   3'- cCUGUAcUGGCGGCAgUGcUCGCA-CC- -5'
29478 3' -55.5 NC_006151.1 + 113087 0.66 0.929732
Target:  5'- cGGcCGUcGCCGCCGcCACcggGGGCG-GGg -3'
miRNA:   3'- -CCuGUAcUGGCGGCaGUG---CUCGCaCC- -5'
29478 3' -55.5 NC_006151.1 + 115112 0.66 0.929732
Target:  5'- aGGCcgGcGCCGCCGgcgaCGCGcGCGUGc -3'
miRNA:   3'- cCUGuaC-UGGCGGCa---GUGCuCGCACc -5'
29478 3' -55.5 NC_006151.1 + 51735 0.66 0.929218
Target:  5'- gGGACAUGGCCacguagacGCUGUUcaugcgcagguugGCGcGCGUGa -3'
miRNA:   3'- -CCUGUACUGG--------CGGCAG-------------UGCuCGCACc -5'
29478 3' -55.5 NC_006151.1 + 35240 0.66 0.92449
Target:  5'- cGAgAUGGCCGCCG-CGgGGGCc-GGa -3'
miRNA:   3'- cCUgUACUGGCGGCaGUgCUCGcaCC- -5'
29478 3' -55.5 NC_006151.1 + 129093 0.66 0.92449
Target:  5'- gGGGCGUaGuuGCUGcgCACGAGCGccaGGg -3'
miRNA:   3'- -CCUGUAcUggCGGCa-GUGCUCGCa--CC- -5'
29478 3' -55.5 NC_006151.1 + 96919 0.66 0.92449
Target:  5'- gGGACAagccggGACgGgCCGggaUCGCGGGCG-GGa -3'
miRNA:   3'- -CCUGUa-----CUGgC-GGC---AGUGCUCGCaCC- -5'
29478 3' -55.5 NC_006151.1 + 18424 0.67 0.919015
Target:  5'- gGGAgGagGGCCGCCG--GCGGGCGUc- -3'
miRNA:   3'- -CCUgUa-CUGGCGGCagUGCUCGCAcc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.