miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29478 3' -55.5 NC_006151.1 + 72919 0.67 0.913308
Target:  5'- uGGC--GACCGCC-UCgGCGGGCGUGa -3'
miRNA:   3'- cCUGuaCUGGCGGcAG-UGCUCGCACc -5'
29478 3' -55.5 NC_006151.1 + 80795 0.67 0.913308
Target:  5'- cGGugAUGGCCGCCccCACGA-CGgaGGc -3'
miRNA:   3'- -CCugUACUGGCGGcaGUGCUcGCa-CC- -5'
29478 3' -55.5 NC_006151.1 + 106627 0.67 0.913308
Target:  5'- cGAC---GCCGCgGUCAcCGAGCGccUGGa -3'
miRNA:   3'- cCUGuacUGGCGgCAGU-GCUCGC--ACC- -5'
29478 3' -55.5 NC_006151.1 + 98323 0.67 0.910961
Target:  5'- uGGAguucuuCAUGGCCGCgGgccgcgagacgccCGCGGGCGUGc -3'
miRNA:   3'- -CCU------GUACUGGCGgCa------------GUGCUCGCACc -5'
29478 3' -55.5 NC_006151.1 + 112657 0.67 0.90737
Target:  5'- cGACGUGua--CCGUCGCGAGCGcucgcUGGc -3'
miRNA:   3'- cCUGUACuggcGGCAGUGCUCGC-----ACC- -5'
29478 3' -55.5 NC_006151.1 + 118894 0.67 0.90737
Target:  5'- cGACGcGGCCGCCGgcggccuCGAGCGccgcaUGGc -3'
miRNA:   3'- cCUGUaCUGGCGGCagu----GCUCGC-----ACC- -5'
29478 3' -55.5 NC_006151.1 + 23740 0.67 0.90737
Target:  5'- gGGGCAccuugcagUGGCCGCCGUCAaagaaccaGGCGacGGu -3'
miRNA:   3'- -CCUGU--------ACUGGCGGCAGUgc------UCGCa-CC- -5'
29478 3' -55.5 NC_006151.1 + 17613 0.67 0.901202
Target:  5'- cGGugAUGGCCGUCacccccauggCGCGAGCGc-- -3'
miRNA:   3'- -CCugUACUGGCGGca--------GUGCUCGCacc -5'
29478 3' -55.5 NC_006151.1 + 102352 0.67 0.901202
Target:  5'- uGGACGUGGCCGgCG--ACGAcGCGUc- -3'
miRNA:   3'- -CCUGUACUGGCgGCagUGCU-CGCAcc -5'
29478 3' -55.5 NC_006151.1 + 138004 0.67 0.901202
Target:  5'- cGGCGca--CGCCGUCACGcGCGUGc -3'
miRNA:   3'- cCUGUacugGCGGCAGUGCuCGCACc -5'
29478 3' -55.5 NC_006151.1 + 89524 0.67 0.900573
Target:  5'- cGGACGUGGuCCGCCu---CGAGCagcgccgaggccgGUGGa -3'
miRNA:   3'- -CCUGUACU-GGCGGcaguGCUCG-------------CACC- -5'
29478 3' -55.5 NC_006151.1 + 137156 0.67 0.894808
Target:  5'- cGGAgAUGGCCGCg--CACGAGCc-GGc -3'
miRNA:   3'- -CCUgUACUGGCGgcaGUGCUCGcaCC- -5'
29478 3' -55.5 NC_006151.1 + 18811 0.67 0.894808
Target:  5'- uGACGUacucGGCCGCgGUggcgACGAGCGUGu -3'
miRNA:   3'- cCUGUA----CUGGCGgCAg---UGCUCGCACc -5'
29478 3' -55.5 NC_006151.1 + 120746 0.67 0.894808
Target:  5'- gGGACccGGCCG-CGUCAUG-GCcUGGg -3'
miRNA:   3'- -CCUGuaCUGGCgGCAGUGCuCGcACC- -5'
29478 3' -55.5 NC_006151.1 + 31622 0.67 0.88819
Target:  5'- cGGGgAUGcCgCGCCGgCACGAGCGcacgcGGg -3'
miRNA:   3'- -CCUgUACuG-GCGGCaGUGCUCGCa----CC- -5'
29478 3' -55.5 NC_006151.1 + 5110 0.67 0.88819
Target:  5'- aGACgGUGGCgGCCcggCGCGGGCGagUGGg -3'
miRNA:   3'- cCUG-UACUGgCGGca-GUGCUCGC--ACC- -5'
29478 3' -55.5 NC_006151.1 + 135394 0.68 0.881352
Target:  5'- cGGCGUccaGGCCGUCGUCGCcgGAGgccuCGUGGc -3'
miRNA:   3'- cCUGUA---CUGGCGGCAGUG--CUC----GCACC- -5'
29478 3' -55.5 NC_006151.1 + 127728 0.68 0.881352
Target:  5'- cGGCGU--CC-CCGUCGCGGGCG-GGa -3'
miRNA:   3'- cCUGUAcuGGcGGCAGUGCUCGCaCC- -5'
29478 3' -55.5 NC_006151.1 + 55591 0.68 0.881352
Target:  5'- -uACGUG-CCGCCG-UACGAGUcggacGUGGa -3'
miRNA:   3'- ccUGUACuGGCGGCaGUGCUCG-----CACC- -5'
29478 3' -55.5 NC_006151.1 + 3439 0.68 0.874299
Target:  5'- cGGCGgaaGCCGCCGUCGgGcGCG-GGg -3'
miRNA:   3'- cCUGUac-UGGCGGCAGUgCuCGCaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.