miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29478 3' -55.5 NC_006151.1 + 3439 0.68 0.874299
Target:  5'- cGGCGgaaGCCGCCGUCGgGcGCG-GGg -3'
miRNA:   3'- cCUGUac-UGGCGGCAGUgCuCGCaCC- -5'
29478 3' -55.5 NC_006151.1 + 3871 0.66 0.944062
Target:  5'- gGGGCGcccGCCGCCGccggCGCcGGCGcUGGg -3'
miRNA:   3'- -CCUGUac-UGGCGGCa---GUGcUCGC-ACC- -5'
29478 3' -55.5 NC_006151.1 + 4207 0.7 0.765691
Target:  5'- cGGGCccgagGGCgGCCGgggCGCGGGCG-GGc -3'
miRNA:   3'- -CCUGua---CUGgCGGCa--GUGCUCGCaCC- -5'
29478 3' -55.5 NC_006151.1 + 5110 0.67 0.88819
Target:  5'- aGACgGUGGCgGCCcggCGCGGGCGagUGGg -3'
miRNA:   3'- cCUG-UACUGgCGGca-GUGCUCGC--ACC- -5'
29478 3' -55.5 NC_006151.1 + 17613 0.67 0.901202
Target:  5'- cGGugAUGGCCGUCacccccauggCGCGAGCGc-- -3'
miRNA:   3'- -CCugUACUGGCGGca--------GUGCUCGCacc -5'
29478 3' -55.5 NC_006151.1 + 18424 0.67 0.919015
Target:  5'- gGGAgGagGGCCGCCG--GCGGGCGUc- -3'
miRNA:   3'- -CCUgUa-CUGGCGGCagUGCUCGCAcc -5'
29478 3' -55.5 NC_006151.1 + 18811 0.67 0.894808
Target:  5'- uGACGUacucGGCCGCgGUggcgACGAGCGUGu -3'
miRNA:   3'- cCUGUA----CUGGCGgCAg---UGCUCGCACc -5'
29478 3' -55.5 NC_006151.1 + 18856 0.7 0.764756
Target:  5'- cGACGUGGCCGuuGugggucaUCACGAGCa--- -3'
miRNA:   3'- cCUGUACUGGCggC-------AGUGCUCGcacc -5'
29478 3' -55.5 NC_006151.1 + 19389 0.66 0.929732
Target:  5'- uGGGCGUGGcCCGCCGgacggUCAgGuGCGg-- -3'
miRNA:   3'- -CCUGUACU-GGCGGC-----AGUgCuCGCacc -5'
29478 3' -55.5 NC_006151.1 + 20136 0.69 0.844026
Target:  5'- gGGGCGggcGCCGCgGggGCGGcGCGUGGa -3'
miRNA:   3'- -CCUGUac-UGGCGgCagUGCU-CGCACC- -5'
29478 3' -55.5 NC_006151.1 + 21487 0.73 0.617528
Target:  5'- cGGGCA-GGCgGCCGgggggCGCGGGCGUcaccGGg -3'
miRNA:   3'- -CCUGUaCUGgCGGCa----GUGCUCGCA----CC- -5'
29478 3' -55.5 NC_006151.1 + 22971 0.76 0.452575
Target:  5'- cGGugGUGACCGUgGUCAUGGuCGUGa -3'
miRNA:   3'- -CCugUACUGGCGgCAGUGCUcGCACc -5'
29478 3' -55.5 NC_006151.1 + 23740 0.67 0.90737
Target:  5'- gGGGCAccuugcagUGGCCGCCGUCAaagaaccaGGCGacGGu -3'
miRNA:   3'- -CCUGU--------ACUGGCGGCAGUgc------UCGCa-CC- -5'
29478 3' -55.5 NC_006151.1 + 28076 0.69 0.802029
Target:  5'- cGACGUcACCGUCGUCGuccgggcguccuCGAGCG-GGg -3'
miRNA:   3'- cCUGUAcUGGCGGCAGU------------GCUCGCaCC- -5'
29478 3' -55.5 NC_006151.1 + 31185 0.66 0.929732
Target:  5'- uGGCAcGGuCCGCCG-CAC-AGUGUGGc -3'
miRNA:   3'- cCUGUaCU-GGCGGCaGUGcUCGCACC- -5'
29478 3' -55.5 NC_006151.1 + 31622 0.67 0.88819
Target:  5'- cGGGgAUGcCgCGCCGgCACGAGCGcacgcGGg -3'
miRNA:   3'- -CCUgUACuG-GCGGCaGUGCUCGCa----CC- -5'
29478 3' -55.5 NC_006151.1 + 31682 0.68 0.869235
Target:  5'- aGGGCcgGGCCGCCGagCcggccgcgccauuggGCGccgggcggaacggGGCGUGGa -3'
miRNA:   3'- -CCUGuaCUGGCGGCa-G---------------UGC-------------UCGCACC- -5'
29478 3' -55.5 NC_006151.1 + 31973 0.71 0.697989
Target:  5'- gGGACGUGcCCGCCGcCugGgagccGGCGaGGa -3'
miRNA:   3'- -CCUGUACuGGCGGCaGugC-----UCGCaCC- -5'
29478 3' -55.5 NC_006151.1 + 35240 0.66 0.92449
Target:  5'- cGAgAUGGCCGCCG-CGgGGGCc-GGa -3'
miRNA:   3'- cCUgUACUGGCGGCaGUgCUCGcaCC- -5'
29478 3' -55.5 NC_006151.1 + 35402 0.69 0.827739
Target:  5'- gGGGCAagaUGGCCGCCG-CGgGGGCc-GGg -3'
miRNA:   3'- -CCUGU---ACUGGCGGCaGUgCUCGcaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.