miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29478 5' -58.5 NC_006151.1 + 92667 0.66 0.777664
Target:  5'- gCCCUGCUGC-CgGCgGCCGGGGa---- -3'
miRNA:   3'- -GGGAUGACGaG-CGgUGGCCUCcagua -5'
29478 5' -58.5 NC_006151.1 + 11017 0.66 0.768394
Target:  5'- gCCCgcccGCUcGCUCGCCgggccggccgGCCGGGGGcCc- -3'
miRNA:   3'- -GGGa---UGA-CGAGCGG----------UGGCCUCCaGua -5'
29478 5' -58.5 NC_006151.1 + 135183 0.67 0.759005
Target:  5'- gCCgGCUGC-CGCCGCCGGGccaGUCc- -3'
miRNA:   3'- gGGaUGACGaGCGGUGGCCUc--CAGua -5'
29478 5' -58.5 NC_006151.1 + 131038 0.67 0.759005
Target:  5'- gCCUcCcGCUCGUCgggGCCGGAGGcCGUc -3'
miRNA:   3'- gGGAuGaCGAGCGG---UGGCCUCCaGUA- -5'
29478 5' -58.5 NC_006151.1 + 38895 0.67 0.74855
Target:  5'- gCCUACUGCcCGCCcgagguggcccgcGCCucguggaccaGGAGGUCu- -3'
miRNA:   3'- gGGAUGACGaGCGG-------------UGG----------CCUCCAGua -5'
29478 5' -58.5 NC_006151.1 + 42287 0.67 0.739905
Target:  5'- gCCU----CUCGCC-CCGGGGGUCGg -3'
miRNA:   3'- gGGAugacGAGCGGuGGCCUCCAGUa -5'
29478 5' -58.5 NC_006151.1 + 89213 0.67 0.739905
Target:  5'- uCCCUcGCUGCUguugcCGCCGCCGcccccguuGGGcGUCGUg -3'
miRNA:   3'- -GGGA-UGACGA-----GCGGUGGC--------CUC-CAGUA- -5'
29478 5' -58.5 NC_006151.1 + 113089 0.67 0.739905
Target:  5'- gCCgucGCcGC-CGCCACCGGGGG-CGg -3'
miRNA:   3'- gGGa--UGaCGaGCGGUGGCCUCCaGUa -5'
29478 5' -58.5 NC_006151.1 + 100142 0.67 0.737007
Target:  5'- aCCUGCUGgcacgcgcccuccggCGCCGCCuGGAGGaCAUg -3'
miRNA:   3'- gGGAUGACga-------------GCGGUGG-CCUCCaGUA- -5'
29478 5' -58.5 NC_006151.1 + 106569 0.67 0.7341
Target:  5'- cCCCgcgGCUGCUcucggcgcuguggucCGCCcugcaGCCGGAGG-CGa -3'
miRNA:   3'- -GGGa--UGACGA---------------GCGG-----UGGCCUCCaGUa -5'
29478 5' -58.5 NC_006151.1 + 137419 0.67 0.730213
Target:  5'- gCCCU-C-GC-CGCCGCCGcGGGGUCc- -3'
miRNA:   3'- -GGGAuGaCGaGCGGUGGC-CUCCAGua -5'
29478 5' -58.5 NC_006151.1 + 105042 0.67 0.720437
Target:  5'- gCgCUGCUGCUCGgCGCCGucGAGGa--- -3'
miRNA:   3'- -GgGAUGACGAGCgGUGGC--CUCCagua -5'
29478 5' -58.5 NC_006151.1 + 48574 0.68 0.670622
Target:  5'- aCCCUGCgGCcUGCCGCCcGGGGUg-- -3'
miRNA:   3'- -GGGAUGaCGaGCGGUGGcCUCCAgua -5'
29478 5' -58.5 NC_006151.1 + 5894 0.68 0.660533
Target:  5'- gCCUcugccGCUGCgagUGCUGCCGG-GGUCGg -3'
miRNA:   3'- gGGA-----UGACGa--GCGGUGGCCuCCAGUa -5'
29478 5' -58.5 NC_006151.1 + 109724 0.7 0.549762
Target:  5'- aCCCcGCUgcGCUCGCCGCUGGAGcGg--- -3'
miRNA:   3'- -GGGaUGA--CGAGCGGUGGCCUC-Cagua -5'
29478 5' -58.5 NC_006151.1 + 36704 0.7 0.549762
Target:  5'- cCCCUGCUcgacgaGCcCGCCGCCGcGAGG-CGg -3'
miRNA:   3'- -GGGAUGA------CGaGCGGUGGC-CUCCaGUa -5'
29478 5' -58.5 NC_006151.1 + 78287 0.7 0.539895
Target:  5'- gCCgaGCUGCUaCGCCgcGCUGGAGGgCAUg -3'
miRNA:   3'- -GGgaUGACGA-GCGG--UGGCCUCCaGUA- -5'
29478 5' -58.5 NC_006151.1 + 98505 0.71 0.520347
Target:  5'- gCCCcGCUGCUggaGCUcCUGGGGGUCGUc -3'
miRNA:   3'- -GGGaUGACGAg--CGGuGGCCUCCAGUA- -5'
29478 5' -58.5 NC_006151.1 + 138708 0.71 0.491568
Target:  5'- gCCCggcGCUGCgCGCCGCgCGcGGGUCGUg -3'
miRNA:   3'- -GGGa--UGACGaGCGGUG-GCcUCCAGUA- -5'
29478 5' -58.5 NC_006151.1 + 48375 1.07 0.002257
Target:  5'- gCCCUACUGCUCGCCACCGGAGGUCAUc -3'
miRNA:   3'- -GGGAUGACGAGCGGUGGCCUCCAGUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.