miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 48209 1.06 0.000373
Target:  5'- uCACGCCCGCGCCCCCCACCCGCGCUCc -3'
miRNA:   3'- -GUGCGGGCGCGGGGGGUGGGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 88982 0.83 0.023203
Target:  5'- gGCGCacccgaagcugaCCGCGUCCCCCACCCGCGC-Cg -3'
miRNA:   3'- gUGCG------------GGCGCGGGGGGUGGGCGCGaG- -5'
29479 3' -68 NC_006151.1 + 59318 0.82 0.027047
Target:  5'- gCGgGCCCGCGCCCccgCCCGCCCccagcGCGCUCa -3'
miRNA:   3'- -GUgCGGGCGCGGG---GGGUGGG-----CGCGAG- -5'
29479 3' -68 NC_006151.1 + 68412 0.8 0.041679
Target:  5'- gCGCGCCCGCcCCCCUCGCCC-CGCUa -3'
miRNA:   3'- -GUGCGGGCGcGGGGGGUGGGcGCGAg -5'
29479 3' -68 NC_006151.1 + 52109 0.79 0.04577
Target:  5'- gCGCGCCgCGCaGCCCCCCcauaaacaccucgcACCCGCGCa- -3'
miRNA:   3'- -GUGCGG-GCG-CGGGGGG--------------UGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 56345 0.78 0.051017
Target:  5'- aGCGCgCGCGCgCCCCGCCgGCGCg- -3'
miRNA:   3'- gUGCGgGCGCGgGGGGUGGgCGCGag -5'
29479 3' -68 NC_006151.1 + 37912 0.78 0.053653
Target:  5'- uGCGCCCGCGUCCCgCCGCcuucgccgCCGCGCa- -3'
miRNA:   3'- gUGCGGGCGCGGGG-GGUG--------GGCGCGag -5'
29479 3' -68 NC_006151.1 + 7625 0.77 0.063961
Target:  5'- cCGCGaccCCCGCgGUCgCCCCACCCGCGcCUCg -3'
miRNA:   3'- -GUGC---GGGCG-CGG-GGGGUGGGCGC-GAG- -5'
29479 3' -68 NC_006151.1 + 38044 0.77 0.065092
Target:  5'- -cCGCCCGCGCCCcggccgcccucgggCCCGCCUGC-CUCg -3'
miRNA:   3'- guGCGGGCGCGGG--------------GGGUGGGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 38326 0.77 0.065582
Target:  5'- --aGCCCGCGCCCggCCUGCCCcCGCUCu -3'
miRNA:   3'- gugCGGGCGCGGG--GGGUGGGcGCGAG- -5'
29479 3' -68 NC_006151.1 + 87525 0.77 0.068943
Target:  5'- cCGCGCCCGCcucgGCCCCCCAgCCGCcCg- -3'
miRNA:   3'- -GUGCGGGCG----CGGGGGGUgGGCGcGag -5'
29479 3' -68 NC_006151.1 + 104158 0.76 0.074112
Target:  5'- gACGCCgcggagcUGCGCCCCgCCGCCgagcgCGCGCUCg -3'
miRNA:   3'- gUGCGG-------GCGCGGGG-GGUGG-----GCGCGAG- -5'
29479 3' -68 NC_006151.1 + 119527 0.76 0.076168
Target:  5'- cCGCGCCU-CGCgCCCCGCCUGCGCg- -3'
miRNA:   3'- -GUGCGGGcGCGgGGGGUGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 86202 0.76 0.078865
Target:  5'- gCGgGCCCGCuGCCCaucaacaucgaccaCCGCCCGCGCUg -3'
miRNA:   3'- -GUgCGGGCG-CGGGg-------------GGUGGGCGCGAg -5'
29479 3' -68 NC_006151.1 + 37130 0.76 0.082058
Target:  5'- --gGCCCgGCGCCCCaCuCGCCCGCGC-Cg -3'
miRNA:   3'- gugCGGG-CGCGGGG-G-GUGGGCGCGaG- -5'
29479 3' -68 NC_006151.1 + 108180 0.75 0.084117
Target:  5'- -cCGCCCGC-CCCCCCACCacCGUcuGCUCa -3'
miRNA:   3'- guGCGGGCGcGGGGGGUGG--GCG--CGAG- -5'
29479 3' -68 NC_006151.1 + 119566 0.75 0.086224
Target:  5'- -cCGCCUGCGCCaCCgCuCCCGCGCUUc -3'
miRNA:   3'- guGCGGGCGCGG-GGgGuGGGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 123002 0.75 0.086224
Target:  5'- aCGgGCCCgGCGCgCCCCCGCCgGCGgaCg -3'
miRNA:   3'- -GUgCGGG-CGCG-GGGGGUGGgCGCgaG- -5'
29479 3' -68 NC_006151.1 + 5732 0.75 0.088381
Target:  5'- gGCGCcgggguccgaggCCGCGCCgCCgGCCCGgGCUCa -3'
miRNA:   3'- gUGCG------------GGCGCGGgGGgUGGGCgCGAG- -5'
29479 3' -68 NC_006151.1 + 39131 0.75 0.088381
Target:  5'- gGCGcCCCGCGCCCggCCUgggACCCGCGC-Cg -3'
miRNA:   3'- gUGC-GGGCGCGGG--GGG---UGGGCGCGaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.