miRNA display CGI


Results 1 - 20 of 341 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 3' -68 NC_006151.1 + 754 0.72 0.154113
Target:  5'- gGCGCCCGCcccauugGCUCCCCucgcGCCaCGCGgUCg -3'
miRNA:   3'- gUGCGGGCG-------CGGGGGG----UGG-GCGCgAG- -5'
29479 3' -68 NC_006151.1 + 2503 0.7 0.214215
Target:  5'- gGCGCCCGCGUcaaaguccgggUCCCCgaGCCCgaGCGCg- -3'
miRNA:   3'- gUGCGGGCGCG-----------GGGGG--UGGG--CGCGag -5'
29479 3' -68 NC_006151.1 + 3873 0.73 0.115743
Target:  5'- gGCGCCCGcCGCCgCCggCGCCgGCGCUg -3'
miRNA:   3'- gUGCGGGC-GCGGgGG--GUGGgCGCGAg -5'
29479 3' -68 NC_006151.1 + 5732 0.75 0.088381
Target:  5'- gGCGCcgggguccgaggCCGCGCCgCCgGCCCGgGCUCa -3'
miRNA:   3'- gUGCG------------GGCGCGGgGGgUGGGCgCGAG- -5'
29479 3' -68 NC_006151.1 + 7625 0.77 0.063961
Target:  5'- cCGCGaccCCCGCgGUCgCCCCACCCGCGcCUCg -3'
miRNA:   3'- -GUGC---GGGCG-CGG-GGGGUGGGCGC-GAG- -5'
29479 3' -68 NC_006151.1 + 8259 0.68 0.260621
Target:  5'- gCGCGCCgGgaCGCCCCuCCGggggaaagagugucCCCGCGCg- -3'
miRNA:   3'- -GUGCGGgC--GCGGGG-GGU--------------GGGCGCGag -5'
29479 3' -68 NC_006151.1 + 8831 0.68 0.262359
Target:  5'- -gUGCgCGCGCCUCUC-CCCGUGCg- -3'
miRNA:   3'- guGCGgGCGCGGGGGGuGGGCGCGag -5'
29479 3' -68 NC_006151.1 + 9100 0.68 0.256602
Target:  5'- -cCuCCC-CGCCCCCgACCCGC-CUCg -3'
miRNA:   3'- guGcGGGcGCGGGGGgUGGGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 9180 0.7 0.219165
Target:  5'- -cCGCCCGCccucGCCCCcuccgucucaugCCACCCGCGg-- -3'
miRNA:   3'- guGCGGGCG----CGGGG------------GGUGGGCGCgag -5'
29479 3' -68 NC_006151.1 + 9469 0.73 0.121502
Target:  5'- cCGCGUCCGCuucgGCCCCCCGCggCCGCGg-- -3'
miRNA:   3'- -GUGCGGGCG----CGGGGGGUG--GGCGCgag -5'
29479 3' -68 NC_006151.1 + 9658 0.69 0.22936
Target:  5'- gGCGcCCCGCGCUUCCCcuuCCCGC-UUCc -3'
miRNA:   3'- gUGC-GGGCGCGGGGGGu--GGGCGcGAG- -5'
29479 3' -68 NC_006151.1 + 10119 0.73 0.12448
Target:  5'- aGCGCUCGCGCCCCUCGCUCuCuCUCc -3'
miRNA:   3'- gUGCGGGCGCGGGGGGUGGGcGcGAG- -5'
29479 3' -68 NC_006151.1 + 10160 0.72 0.154113
Target:  5'- cCGCGucucuucCCCGCGUCCCCUcUCUGCGUUCg -3'
miRNA:   3'- -GUGC-------GGGCGCGGGGGGuGGGCGCGAG- -5'
29479 3' -68 NC_006151.1 + 10299 0.66 0.354135
Target:  5'- gCACGuCCCGCGUCCCCgGCgucaucaCGCGg-- -3'
miRNA:   3'- -GUGC-GGGCGCGGGGGgUGg------GCGCgag -5'
29479 3' -68 NC_006151.1 + 10492 0.66 0.354135
Target:  5'- -cCGCCCggcgcGCGCCCgCCGCCgcagGCGCg- -3'
miRNA:   3'- guGCGGG-----CGCGGGgGGUGGg---CGCGag -5'
29479 3' -68 NC_006151.1 + 10535 0.68 0.292723
Target:  5'- gGCGCCUcuccaCGCCCCguuCCGCCCgGCGCcCa -3'
miRNA:   3'- gUGCGGGc----GCGGGG---GGUGGG-CGCGaG- -5'
29479 3' -68 NC_006151.1 + 10586 0.67 0.305616
Target:  5'- gGCgGCCCGgcccuuccucCGCCCUCCucccucCCCGCGCg- -3'
miRNA:   3'- gUG-CGGGC----------GCGGGGGGu-----GGGCGCGag -5'
29479 3' -68 NC_006151.1 + 10633 0.69 0.239413
Target:  5'- uGCGCUCGUGCCggcgcggcauCCCCGCCCaggcggcgggggaGCGCg- -3'
miRNA:   3'- gUGCGGGCGCGG----------GGGGUGGG-------------CGCGag -5'
29479 3' -68 NC_006151.1 + 10682 0.67 0.305616
Target:  5'- aGCGCgCCGC-CCCCCCGugaucacgUUCGCGCa- -3'
miRNA:   3'- gUGCG-GGCGcGGGGGGU--------GGGCGCGag -5'
29479 3' -68 NC_006151.1 + 11006 0.7 0.20936
Target:  5'- gGC-CCCG-GCUCgCCCGCCCGCucGCUCg -3'
miRNA:   3'- gUGcGGGCgCGGG-GGGUGGGCG--CGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.