miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 5' -52.6 NC_006151.1 + 1614 0.66 0.974644
Target:  5'- uGGGAGaaGGAGgagaagGGGACcg-GggGACc -3'
miRNA:   3'- -UCCUCgaCCUUa-----CCCUGcuaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 36194 0.66 0.961825
Target:  5'- cGGGGCUcGGGcgagaucGUGGugcuaGACGAcGAAGACg -3'
miRNA:   3'- uCCUCGA-CCU-------UACC-----CUGCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 44030 0.66 0.964622
Target:  5'- gGGGAGCcggccgucgagaagUGGAugaGGGACag-GggGACg -3'
miRNA:   3'- -UCCUCG--------------ACCUua-CCCUGcuaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 141359 0.66 0.965633
Target:  5'- cAGGAGCgucuccgaguaGGAcgGGGGCGGgccccGGGCa -3'
miRNA:   3'- -UCCUCGa----------CCUuaCCCUGCUacu--UCUG- -5'
29479 5' -52.6 NC_006151.1 + 5846 0.66 0.965965
Target:  5'- gGGGAgGCUgcGGAggGGGACGAgcgcccggggccgccGggGGCc -3'
miRNA:   3'- -UCCU-CGA--CCUuaCCCUGCUa--------------CuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 42263 0.66 0.967593
Target:  5'- gGGGAGCggGGggUGGGaucGCGAgccucucgccccgGggGuCg -3'
miRNA:   3'- -UCCUCGa-CCuuACCC---UGCUa------------CuuCuG- -5'
29479 5' -52.6 NC_006151.1 + 34350 0.66 0.968855
Target:  5'- uGGGGCgugucucgUGGggUGGGAgGGgggaccgGGAGAg -3'
miRNA:   3'- uCCUCG--------ACCuuACCCUgCUa------CUUCUg -5'
29479 5' -52.6 NC_006151.1 + 77606 0.66 0.968855
Target:  5'- cGGAGCUGGAccucUGcGGccGCGcgGAgcuGGACg -3'
miRNA:   3'- uCCUCGACCUu---AC-CC--UGCuaCU---UCUG- -5'
29479 5' -52.6 NC_006151.1 + 121554 0.66 0.968855
Target:  5'- gGGGAGgaGGAG-GGGAa---GggGACg -3'
miRNA:   3'- -UCCUCgaCCUUaCCCUgcuaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 15801 0.66 0.970082
Target:  5'- aAGGGGa-GGAcgGGGgggaagacggcgaagACGGUGAAGAa -3'
miRNA:   3'- -UCCUCgaCCUuaCCC---------------UGCUACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 30829 0.66 0.971857
Target:  5'- gAGGAGUUGc-GUGGGcggagaggaGCGAgGAGGACu -3'
miRNA:   3'- -UCCUCGACcuUACCC---------UGCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 33167 0.66 0.971857
Target:  5'- cGGGGGCggGGAGgaaGGGAgGuGUGggGGg -3'
miRNA:   3'- -UCCUCGa-CCUUa--CCCUgC-UACuuCUg -5'
29479 5' -52.6 NC_006151.1 + 137598 0.66 0.971857
Target:  5'- cGGGGUcGGGAUcgGGGGCGcgGGcggGGACc -3'
miRNA:   3'- uCCUCGaCCUUA--CCCUGCuaCU---UCUG- -5'
29479 5' -52.6 NC_006151.1 + 44335 0.66 0.974375
Target:  5'- aAGGAGa-GGAgggccgcggacggGUGGGACGGcgGggGAg -3'
miRNA:   3'- -UCCUCgaCCU-------------UACCCUGCUa-CuuCUg -5'
29479 5' -52.6 NC_006151.1 + 33082 0.67 0.95041
Target:  5'- aGGGGGCgaGGGc--GGGCGGUGGAGGg -3'
miRNA:   3'- -UCCUCGa-CCUuacCCUGCUACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 80324 0.67 0.95041
Target:  5'- cAGGAGUuuUGGGGggaccGGGGCGAgGgcGGCu -3'
miRNA:   3'- -UCCUCG--ACCUUa----CCCUGCUaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 43359 0.67 0.953763
Target:  5'- gGGGGGggGGGAgagagaccgucgGGGGCGGUGguGGCc -3'
miRNA:   3'- -UCCUCgaCCUUa-----------CCCUGCUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 37429 0.67 0.954576
Target:  5'- gAGGGGCUc---UGGGACGAgGAcGACg -3'
miRNA:   3'- -UCCUCGAccuuACCCUGCUaCUuCUG- -5'
29479 5' -52.6 NC_006151.1 + 8562 0.67 0.958499
Target:  5'- gAGaGAGCgugcgUGuGggUGGGugGGugUGAGGGCc -3'
miRNA:   3'- -UC-CUCG-----AC-CuuACCCugCU--ACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 110794 0.67 0.945997
Target:  5'- cGGGGCUaGGGcggGGGGCGAgggcaGAAGGu -3'
miRNA:   3'- uCCUCGA-CCUua-CCCUGCUa----CUUCUg -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.