miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 5' -52.6 NC_006151.1 + 48244 1.09 0.005019
Target:  5'- gAGGAGCUGGAAUGGGACGAUGAAGACc -3'
miRNA:   3'- -UCCUCGACCUUACCCUGCUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 1880 0.83 0.22317
Target:  5'- gAGGAGgaGGAcgGGGACGGggacGAGGACg -3'
miRNA:   3'- -UCCUCgaCCUuaCCCUGCUa---CUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16174 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16384 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16209 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16244 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16279 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16349 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16314 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16454 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16419 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16489 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 16139 0.83 0.234712
Target:  5'- aGGGAGaggGGAGUGGGAUggGGUGGAGACg -3'
miRNA:   3'- -UCCUCga-CCUUACCCUG--CUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 45051 0.8 0.322227
Target:  5'- gGGGGGUgugggGGGAUGGGACGGcUGGAGAg -3'
miRNA:   3'- -UCCUCGa----CCUUACCCUGCU-ACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 27555 0.8 0.36184
Target:  5'- gGGGGGCUGGGcUGGGACGggGGccggguggguGGGCg -3'
miRNA:   3'- -UCCUCGACCUuACCCUGCuaCU----------UCUG- -5'
29479 5' -52.6 NC_006151.1 + 29613 0.8 0.36184
Target:  5'- cGGGGGCUGGuGUGGGAgGAgugGggGAa -3'
miRNA:   3'- -UCCUCGACCuUACCCUgCUa--CuuCUg -5'
29479 5' -52.6 NC_006151.1 + 830 0.79 0.378607
Target:  5'- gGGGAgGCUGGGAgugGGGACG--GAAGACg -3'
miRNA:   3'- -UCCU-CGACCUUa--CCCUGCuaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 27506 0.77 0.460187
Target:  5'- cGGGGUgGGAggGGGuGCGAUGggGGCg -3'
miRNA:   3'- uCCUCGaCCUuaCCC-UGCUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 45319 0.77 0.479558
Target:  5'- cGGGAgGCUGGGAgGGuGGCGGUGgAGGACg -3'
miRNA:   3'- -UCCU-CGACCUUaCC-CUGCUAC-UUCUG- -5'
29479 5' -52.6 NC_006151.1 + 29439 0.77 0.489392
Target:  5'- gGGGGGCggcgGGGAgagGGGACGcgGAGGGa -3'
miRNA:   3'- -UCCUCGa---CCUUa--CCCUGCuaCUUCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.