miRNA display CGI


Results 1 - 20 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 5' -52.6 NC_006151.1 + 830 0.79 0.378607
Target:  5'- gGGGAgGCUGGGAgugGGGACG--GAAGACg -3'
miRNA:   3'- -UCCU-CGACCUUa--CCCUGCuaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 1614 0.66 0.974644
Target:  5'- uGGGAGaaGGAGgagaagGGGACcg-GggGACc -3'
miRNA:   3'- -UCCUCgaCCUUa-----CCCUGcuaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 1880 0.83 0.22317
Target:  5'- gAGGAGgaGGAcgGGGACGGggacGAGGACg -3'
miRNA:   3'- -UCCUCgaCCUuaCCCUGCUa---CUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 3815 0.7 0.857787
Target:  5'- uGGAGCUGGAcuUGGugcuGGCGGggcugGAGGGCc -3'
miRNA:   3'- uCCUCGACCUu-ACC----CUGCUa----CUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 4599 0.68 0.914192
Target:  5'- aAGGAGCcgUGGccGUGGGGCGcGUGGAcccGGCg -3'
miRNA:   3'- -UCCUCG--ACCu-UACCCUGC-UACUU---CUG- -5'
29479 5' -52.6 NC_006151.1 + 5175 0.72 0.778025
Target:  5'- cGGAGgaGGAcgaGGACGAgGAGGACg -3'
miRNA:   3'- uCCUCgaCCUuacCCUGCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 5484 0.72 0.748581
Target:  5'- uGGAGUUGGAGUugGGGuuGGaGGAGACg -3'
miRNA:   3'- uCCUCGACCUUA--CCCugCUaCUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 5846 0.66 0.965965
Target:  5'- gGGGAgGCUgcGGAggGGGACGAgcgcccggggccgccGggGGCc -3'
miRNA:   3'- -UCCU-CGA--CCUuaCCCUGCUa--------------CuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 8050 0.74 0.655432
Target:  5'- aGGGAGUUGGGGggagGGGAgccaaGAUGgcGACg -3'
miRNA:   3'- -UCCUCGACCUUa---CCCUg----CUACuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 8562 0.67 0.958499
Target:  5'- gAGaGAGCgugcgUGuGggUGGGugGGugUGAGGGCc -3'
miRNA:   3'- -UC-CUCG-----AC-CuuACCCugCU--ACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 9519 0.71 0.787573
Target:  5'- uGGGGaaGGAAgagGGGACGggGggGAa -3'
miRNA:   3'- uCCUCgaCCUUa--CCCUGCuaCuuCUg -5'
29479 5' -52.6 NC_006151.1 + 10232 0.72 0.748581
Target:  5'- cGGAcGC-GGAggGGGGCGA-GggGACa -3'
miRNA:   3'- uCCU-CGaCCUuaCCCUGCUaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 10454 0.73 0.718151
Target:  5'- gAGGAGgaGGAGgacgcGGcGGCGGUGAAGGa -3'
miRNA:   3'- -UCCUCgaCCUUa----CC-CUGCUACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 11745 0.67 0.941333
Target:  5'- gAGGGGgaGGggUGcGGGCGAgUGA--GCg -3'
miRNA:   3'- -UCCUCgaCCuuAC-CCUGCU-ACUucUG- -5'
29479 5' -52.6 NC_006151.1 + 11804 0.7 0.849693
Target:  5'- gAGGGGC-GGggUgGGGugGggGgcGGCg -3'
miRNA:   3'- -UCCUCGaCCuuA-CCCugCuaCuuCUG- -5'
29479 5' -52.6 NC_006151.1 + 12415 0.69 0.873314
Target:  5'- aGGGGGCUGG-GUGGGGUGAggcGAGuGACc -3'
miRNA:   3'- -UCCUCGACCuUACCCUGCUa--CUU-CUG- -5'
29479 5' -52.6 NC_006151.1 + 15497 0.69 0.894857
Target:  5'- gGGGAGgaGGAAgacGaGGACGAggagGggGAa -3'
miRNA:   3'- -UCCUCgaCCUUa--C-CCUGCUa---CuuCUg -5'
29479 5' -52.6 NC_006151.1 + 15542 0.72 0.778025
Target:  5'- gAGGAGgaagaGGAagGGGACGAggacggGGAGACg -3'
miRNA:   3'- -UCCUCga---CCUuaCCCUGCUa-----CUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 15619 0.69 0.887916
Target:  5'- -cGAGgaGGAcgGGGACGAcuuUGAcgGGGCc -3'
miRNA:   3'- ucCUCgaCCUuaCCCUGCU---ACU--UCUG- -5'
29479 5' -52.6 NC_006151.1 + 15714 0.73 0.728386
Target:  5'- cGGAcgacgGCggGGAcgGGGAaGAUGAAGACg -3'
miRNA:   3'- uCCU-----CGa-CCUuaCCCUgCUACUUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.