miRNA display CGI


Results 21 - 40 of 98 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29479 5' -52.6 NC_006151.1 + 110794 0.67 0.945997
Target:  5'- cGGGGCUaGGGcggGGGGCGAgggcaGAAGGu -3'
miRNA:   3'- uCCUCGA-CCUua-CCCUGCUa----CUUCUg -5'
29479 5' -52.6 NC_006151.1 + 87779 0.67 0.941333
Target:  5'- uGGGGCgGGAgagaguGUGGGugGGaGAGGGu -3'
miRNA:   3'- uCCUCGaCCU------UACCCugCUaCUUCUg -5'
29479 5' -52.6 NC_006151.1 + 16114 0.67 0.941333
Target:  5'- aGGGAGaugGGggUGGaGACGGUGGn--- -3'
miRNA:   3'- -UCCUCga-CCuuACC-CUGCUACUucug -5'
29479 5' -52.6 NC_006151.1 + 11745 0.67 0.941333
Target:  5'- gAGGGGgaGGggUGcGGGCGAgUGA--GCg -3'
miRNA:   3'- -UCCUCgaCCuuAC-CCUGCU-ACUucUG- -5'
29479 5' -52.6 NC_006151.1 + 133614 0.68 0.931244
Target:  5'- gAGGGGCgucugGGggUcgcggcggccGGGGCGGUGGuccgggugcgagAGGCg -3'
miRNA:   3'- -UCCUCGa----CCuuA----------CCCUGCUACU------------UCUG- -5'
29479 5' -52.6 NC_006151.1 + 30031 0.68 0.931244
Target:  5'- gGGGAGgaGGGggGGGAgGAgugagcgGggGAa -3'
miRNA:   3'- -UCCUCgaCCUuaCCCUgCUa------CuuCUg -5'
29479 5' -52.6 NC_006151.1 + 128734 0.68 0.920132
Target:  5'- uGGGGGCUGaGAccAUGGGGuCGAgc-GGGCg -3'
miRNA:   3'- -UCCUCGAC-CU--UACCCU-GCUacuUCUG- -5'
29479 5' -52.6 NC_006151.1 + 95504 0.68 0.914192
Target:  5'- aAGGGGCUgcccgucaugacGGcgcUGcGGACGAUGAGGAa -3'
miRNA:   3'- -UCCUCGA------------CCuu-AC-CCUGCUACUUCUg -5'
29479 5' -52.6 NC_006151.1 + 4599 0.68 0.914192
Target:  5'- aAGGAGCcgUGGccGUGGGGCGcGUGGAcccGGCg -3'
miRNA:   3'- -UCCUCG--ACCu-UACCCUGC-UACUU---CUG- -5'
29479 5' -52.6 NC_006151.1 + 127911 0.68 0.914192
Target:  5'- cGGGGGCcccucgGGGAgcgGGGGCGgcG-AGACg -3'
miRNA:   3'- -UCCUCGa-----CCUUa--CCCUGCuaCuUCUG- -5'
29479 5' -52.6 NC_006151.1 + 45595 0.68 0.914192
Target:  5'- aGGGGGCgggGGGAgccccgacGGGGCGGgcgGAAGGg -3'
miRNA:   3'- -UCCUCGa--CCUUa-------CCCUGCUa--CUUCUg -5'
29479 5' -52.6 NC_006151.1 + 142531 0.68 0.912974
Target:  5'- aGGGGGUUGGGGgaaagggGGGAaCGAggggguugggggGAAGGCg -3'
miRNA:   3'- -UCCUCGACCUUa------CCCU-GCUa-----------CUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 26260 0.69 0.907998
Target:  5'- gGGGAGggGGAGaGGGgcaaACGAUGGggcGGACg -3'
miRNA:   3'- -UCCUCgaCCUUaCCC----UGCUACU---UCUG- -5'
29479 5' -52.6 NC_006151.1 + 93427 0.69 0.901552
Target:  5'- gAGaGAGgaGGAggGGGGCGAgcgGggGuCg -3'
miRNA:   3'- -UC-CUCgaCCUuaCCCUGCUa--CuuCuG- -5'
29479 5' -52.6 NC_006151.1 + 130867 0.69 0.894857
Target:  5'- -cGGGCgGGAccgcaGUGGGcggcgGCGGUGGAGGCg -3'
miRNA:   3'- ucCUCGaCCU-----UACCC-----UGCUACUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 45146 0.69 0.894857
Target:  5'- aGGGGGUUGGAu--GGACGGcUGGauGGACg -3'
miRNA:   3'- -UCCUCGACCUuacCCUGCU-ACU--UCUG- -5'
29479 5' -52.6 NC_006151.1 + 30413 0.69 0.894857
Target:  5'- gGGGAGa-GGAAggagGGGAgGAcgGAGGGCg -3'
miRNA:   3'- -UCCUCgaCCUUa---CCCUgCUa-CUUCUG- -5'
29479 5' -52.6 NC_006151.1 + 15497 0.69 0.894857
Target:  5'- gGGGAGgaGGAAgacGaGGACGAggagGggGAa -3'
miRNA:   3'- -UCCUCgaCCUUa--C-CCUGCUa---CuuCUg -5'
29479 5' -52.6 NC_006151.1 + 15619 0.69 0.887916
Target:  5'- -cGAGgaGGAcgGGGACGAcuuUGAcgGGGCc -3'
miRNA:   3'- ucCUCgaCCUuaCCCUGCU---ACU--UCUG- -5'
29479 5' -52.6 NC_006151.1 + 112035 0.69 0.880733
Target:  5'- cGGGAGCUGGGGccgGcGGGCGGgcGgcGGCg -3'
miRNA:   3'- -UCCUCGACCUUa--C-CCUGCUa-CuuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.