miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2948 3' -62.5 NC_001493.1 + 69741 1.09 0.000652
Target:  5'- aACGAGCCGAGGCCGCGGCAGAGUCCCc -3'
miRNA:   3'- -UGCUCGGCUCCGGCGCCGUCUCAGGG- -5'
2948 3' -62.5 NC_001493.1 + 15003 0.74 0.204867
Target:  5'- uGCGA-UCGAGGCCGCGGguGgaaaGGUCgCCg -3'
miRNA:   3'- -UGCUcGGCUCCGGCGCCguC----UCAG-GG- -5'
2948 3' -62.5 NC_001493.1 + 130558 0.74 0.204867
Target:  5'- uGCGA-UCGAGGCCGCGGguGgaaaGGUCgCCg -3'
miRNA:   3'- -UGCUcGGCUCCGGCGCCguC----UCAG-GG- -5'
2948 3' -62.5 NC_001493.1 + 5309 0.73 0.235998
Target:  5'- cACGcucGGCCccggugaccggGGGGCUgGCGGguGAGUCCCa -3'
miRNA:   3'- -UGC---UCGG-----------CUCCGG-CGCCguCUCAGGG- -5'
2948 3' -62.5 NC_001493.1 + 120863 0.73 0.235998
Target:  5'- cACGcucGGCCccggugaccggGGGGCUgGCGGguGAGUCCCa -3'
miRNA:   3'- -UGC---UCGG-----------CUCCGG-CGCCguCUCAGGG- -5'
2948 3' -62.5 NC_001493.1 + 133317 0.71 0.33114
Target:  5'- -gGGGUCGGGGCCGCaacGCGGGcGUgCCCg -3'
miRNA:   3'- ugCUCGGCUCCGGCGc--CGUCU-CA-GGG- -5'
2948 3' -62.5 NC_001493.1 + 17763 0.71 0.33114
Target:  5'- -gGGGUCGGGGCCGCaacGCGGGcGUgCCCg -3'
miRNA:   3'- ugCUCGGCUCCGGCGc--CGUCU-CA-GGG- -5'
2948 3' -62.5 NC_001493.1 + 1496 0.7 0.36086
Target:  5'- aGCGgaGGCCGAGGCCGguaCAGAGaCCCc -3'
miRNA:   3'- -UGC--UCGGCUCCGGCgccGUCUCaGGG- -5'
2948 3' -62.5 NC_001493.1 + 117051 0.7 0.368575
Target:  5'- aGCGAgagGCCGAGGCCGguaCAGAGaCCCc -3'
miRNA:   3'- -UGCU---CGGCUCCGGCgccGUCUCaGGG- -5'
2948 3' -62.5 NC_001493.1 + 61327 0.7 0.38434
Target:  5'- uAUGAuCCGAGGCagGuUGGCccGGAGUCCCg -3'
miRNA:   3'- -UGCUcGGCUCCGg-C-GCCG--UCUCAGGG- -5'
2948 3' -62.5 NC_001493.1 + 118751 0.7 0.38434
Target:  5'- gACGAgGUCGAGGaugccauccCCGCGGCc--GUCCCa -3'
miRNA:   3'- -UGCU-CGGCUCC---------GGCGCCGucuCAGGG- -5'
2948 3' -62.5 NC_001493.1 + 3197 0.7 0.38434
Target:  5'- gACGAgGUCGAGGaugccauccCCGCGGCc--GUCCCa -3'
miRNA:   3'- -UGCU-CGGCUCC---------GGCGCCGucuCAGGG- -5'
2948 3' -62.5 NC_001493.1 + 87667 0.7 0.38434
Target:  5'- -gGAGCCGGcuccucguacGCCGCGGgGGgcaGGUCCCg -3'
miRNA:   3'- ugCUCGGCUc---------CGGCGCCgUC---UCAGGG- -5'
2948 3' -62.5 NC_001493.1 + 50695 0.69 0.40881
Target:  5'- uACGAGUCGcGGCCGUGGguG-GaCCUu -3'
miRNA:   3'- -UGCUCGGCuCCGGCGCCguCuCaGGG- -5'
2948 3' -62.5 NC_001493.1 + 36865 0.69 0.41718
Target:  5'- uCGGGCCGuuguGGUCGCuGGCGGuccGcCCCg -3'
miRNA:   3'- uGCUCGGCu---CCGGCG-CCGUCu--CaGGG- -5'
2948 3' -62.5 NC_001493.1 + 30200 0.68 0.460542
Target:  5'- aGCGGGCCGcuuaCGCGGCGGAGcgagCCg -3'
miRNA:   3'- -UGCUCGGCuccgGCGCCGUCUCa---GGg -5'
2948 3' -62.5 NC_001493.1 + 19280 0.68 0.487675
Target:  5'- uCG-GCCGAGGCgcagcucgUGUGGCAGgucGGUCUCu -3'
miRNA:   3'- uGCuCGGCUCCG--------GCGCCGUC---UCAGGG- -5'
2948 3' -62.5 NC_001493.1 + 102457 0.68 0.487675
Target:  5'- gGCGGGUCGggGGGUCGCGaCGGccGGUCCUc -3'
miRNA:   3'- -UGCUCGGC--UCCGGCGCcGUC--UCAGGG- -5'
2948 3' -62.5 NC_001493.1 + 12952 0.68 0.487675
Target:  5'- cGCGGGCgcuGGCCGCcGCcGAGUCgCCa -3'
miRNA:   3'- -UGCUCGgcuCCGGCGcCGuCUCAG-GG- -5'
2948 3' -62.5 NC_001493.1 + 85628 0.68 0.496887
Target:  5'- gACGAucaucaCCGAGuuuuauGCCGCGGC--GGUCCCa -3'
miRNA:   3'- -UGCUc-----GGCUC------CGGCGCCGucUCAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.