Results 1 - 15 of 15 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 69707 | 1.1 | 0.004757 |
Target: 5'- aGAAAACCUUCUGGCUCUCGCGCACGAg -3' miRNA: 3'- -CUUUUGGAAGACCGAGAGCGCGUGCU- -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 28456 | 0.7 | 0.843016 |
Target: 5'- cGAGGCCUUCUGcaugcgcgugaGUUCaUCGCGCAgGAc -3' miRNA: 3'- cUUUUGGAAGAC-----------CGAG-AGCGCGUgCU- -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 106648 | 0.7 | 0.867286 |
Target: 5'- uGAAuAUgUUCUGGCUCUugauaucccUGUGCAUGAg -3' miRNA: 3'- -CUUuUGgAAGACCGAGA---------GCGCGUGCU- -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 19115 | 0.69 | 0.882334 |
Target: 5'- -cGGGCCUUcCUGGaCUaucugaccaUCGCGCGCGGg -3' miRNA: 3'- cuUUUGGAA-GACC-GAg--------AGCGCGUGCU- -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 53252 | 0.68 | 0.915675 |
Target: 5'- --uGACUUUUUGGCUCUCGUGgcCACc- -3' miRNA: 3'- cuuUUGGAAGACCGAGAGCGC--GUGcu -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 130143 | 0.67 | 0.951609 |
Target: 5'- -cGGACCUcacGGUcCUCGCGCACGu -3' miRNA: 3'- cuUUUGGAagaCCGaGAGCGCGUGCu -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 14588 | 0.67 | 0.951609 |
Target: 5'- -cGGACCUcacGGUcCUCGCGCACGu -3' miRNA: 3'- cuUUUGGAagaCCGaGAGCGCGUGCu -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 110760 | 0.67 | 0.955727 |
Target: 5'- uGGAAACCgUCuUGGUagaUCGCGUGCGGg -3' miRNA: 3'- -CUUUUGGaAG-ACCGag-AGCGCGUGCU- -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 17000 | 0.67 | 0.955727 |
Target: 5'- cGAGGCg-UCUGGggaCUCUCGgGCAUGAu -3' miRNA: 3'- cUUUUGgaAGACC---GAGAGCgCGUGCU- -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 132554 | 0.67 | 0.955727 |
Target: 5'- cGAGGCg-UCUGGggaCUCUCGgGCAUGAu -3' miRNA: 3'- cUUUUGgaAGACC---GAGAGCgCGUGCU- -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 124028 | 0.66 | 0.963232 |
Target: 5'- --cGACaggaCUGGCUCUgaagagaGCGCGCGAg -3' miRNA: 3'- cuuUUGgaa-GACCGAGAg------CGCGUGCU- -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 8474 | 0.66 | 0.963232 |
Target: 5'- --cGACaggaCUGGCUCUgaagagaGCGCGCGAg -3' miRNA: 3'- cuuUUGgaa-GACCGAGAg------CGCGUGCU- -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 4620 | 0.66 | 0.969801 |
Target: 5'- uGGAAACCgagCUcgacgaucGGCUCUCcCGCAcCGAa -3' miRNA: 3'- -CUUUUGGaa-GA--------CCGAGAGcGCGU-GCU- -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 120174 | 0.66 | 0.969801 |
Target: 5'- uGGAAACCgagCUcgacgaucGGCUCUCcCGCAcCGAa -3' miRNA: 3'- -CUUUUGGaa-GA--------CCGAGAGcGCGU-GCU- -5' |
|||||||
2948 | 5' | -52.3 | NC_001493.1 | + | 30278 | 0.66 | 0.972751 |
Target: 5'- aGAGGACCauUUCcgGGCUCgagccaUCGUGgGCGAc -3' miRNA: 3'- -CUUUUGG--AAGa-CCGAG------AGCGCgUGCU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home