miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29480 5' -49.2 NC_006151.1 + 38185 0.66 0.998842
Target:  5'- cCGUGGCGccGCUGGUGcgcuacagcgUGGa -3'
miRNA:   3'- -GCACCGCcaCGACCACaaaaaaa---GCC- -5'
29480 5' -49.2 NC_006151.1 + 118160 0.66 0.998673
Target:  5'- gGUGGCGccGCUGGUGcg-----CGGc -3'
miRNA:   3'- gCACCGCcaCGACCACaaaaaaaGCC- -5'
29480 5' -49.2 NC_006151.1 + 18489 0.66 0.998396
Target:  5'- uCGUGcGUGGgcagGCUGGUGUacac--CGGc -3'
miRNA:   3'- -GCAC-CGCCa---CGACCACAaaaaaaGCC- -5'
29480 5' -49.2 NC_006151.1 + 8644 0.66 0.997694
Target:  5'- uGUcGGUGGUGCgGGUGUUacuggCGa -3'
miRNA:   3'- gCA-CCGCCACGaCCACAAaaaaaGCc -5'
29480 5' -49.2 NC_006151.1 + 127337 0.67 0.995789
Target:  5'- --cGGgGGUGCUGGUacacguggUCGGu -3'
miRNA:   3'- gcaCCgCCACGACCAcaaaaaa-AGCC- -5'
29480 5' -49.2 NC_006151.1 + 5718 0.68 0.993915
Target:  5'- -cUGGCuGUGCUGGUGgcgc---CGGg -3'
miRNA:   3'- gcACCGcCACGACCACaaaaaaaGCC- -5'
29480 5' -49.2 NC_006151.1 + 21769 0.68 0.992754
Target:  5'- aCGUG-CGGUGCUGGUccacg---CGGg -3'
miRNA:   3'- -GCACcGCCACGACCAcaaaaaaaGCC- -5'
29480 5' -49.2 NC_006151.1 + 123799 0.68 0.990688
Target:  5'- --cGGCGGUGCUGGcc------UCGGa -3'
miRNA:   3'- gcaCCGCCACGACCacaaaaaaAGCC- -5'
29480 5' -49.2 NC_006151.1 + 40547 0.69 0.985548
Target:  5'- gGUGGCGGcGgUGGUGgaagcggCGGc -3'
miRNA:   3'- gCACCGCCaCgACCACaaaaaaaGCC- -5'
29480 5' -49.2 NC_006151.1 + 29610 0.7 0.971554
Target:  5'- --cGGCGGggGCUGGUGUgggaggagUGGg -3'
miRNA:   3'- gcaCCGCCa-CGACCACAaaaaaa--GCC- -5'
29480 5' -49.2 NC_006151.1 + 41064 0.7 0.966567
Target:  5'- gGUGGUGGUGgUGGUGg------UGGg -3'
miRNA:   3'- gCACCGCCACgACCACaaaaaaaGCC- -5'
29480 5' -49.2 NC_006151.1 + 41323 0.71 0.963153
Target:  5'- --gGGUGGUGgUGGUGUUg---UUGGu -3'
miRNA:   3'- gcaCCGCCACgACCACAAaaaaAGCC- -5'
29480 5' -49.2 NC_006151.1 + 44543 0.72 0.942448
Target:  5'- uGUGGUGGUGgUGGUGg-----UCGa -3'
miRNA:   3'- gCACCGCCACgACCACaaaaaaAGCc -5'
29480 5' -49.2 NC_006151.1 + 119133 0.73 0.912915
Target:  5'- uCGUGGgGGcGCUGGUGUUcagcuccaacUCGGu -3'
miRNA:   3'- -GCACCgCCaCGACCACAAaaaa------AGCC- -5'
29480 5' -49.2 NC_006151.1 + 134104 0.74 0.858814
Target:  5'- aCGgagGGCGGcUGCUGGUGUgc----CGGa -3'
miRNA:   3'- -GCa--CCGCC-ACGACCACAaaaaaaGCC- -5'
29480 5' -49.2 NC_006151.1 + 133361 0.74 0.847367
Target:  5'- gGUGGUGGUGgUGGUGgugguggCGGc -3'
miRNA:   3'- gCACCGCCACgACCACaaaaaaaGCC- -5'
29480 5' -49.2 NC_006151.1 + 112069 0.75 0.818776
Target:  5'- gGUGGUGGgGCUGGUGgagcuccccgggUCGGg -3'
miRNA:   3'- gCACCGCCaCGACCACaaaaaa------AGCC- -5'
29480 5' -49.2 NC_006151.1 + 45407 0.76 0.806944
Target:  5'- gGUGGUGGUGCcGGUGUgUUg--UGGg -3'
miRNA:   3'- gCACCGCCACGaCCACAaAAaaaGCC- -5'
29480 5' -49.2 NC_006151.1 + 41086 0.77 0.744858
Target:  5'- gGUGGaCGGUGUUGGUGgucccggCGGg -3'
miRNA:   3'- gCACC-GCCACGACCACaaaaaaaGCC- -5'
29480 5' -49.2 NC_006151.1 + 22707 0.8 0.601653
Target:  5'- gGUGGUGGUGUUGGUGguc---UCGGu -3'
miRNA:   3'- gCACCGCCACGACCACaaaaaaAGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.