miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29481 3' -52.4 NC_006151.1 + 61822 0.66 0.97157
Target:  5'- ---gGUGCUcuacGCGGCGUCGacggUGGCCGc -3'
miRNA:   3'- uagaUAUGA----CGUCGCGGUaa--ACCGGC- -5'
29481 3' -52.4 NC_006151.1 + 103488 0.66 0.968501
Target:  5'- -----cGCUGUGGCGCCuggUGGCgCGc -3'
miRNA:   3'- uagauaUGACGUCGCGGuaaACCG-GC- -5'
29481 3' -52.4 NC_006151.1 + 93623 0.66 0.965203
Target:  5'- gGUCcgcGCUGUAGCGCaCGUacgagaugaUGGCCGg -3'
miRNA:   3'- -UAGauaUGACGUCGCG-GUAa--------ACCGGC- -5'
29481 3' -52.4 NC_006151.1 + 64300 0.66 0.965203
Target:  5'- uGUCgggcGUGCcGCAgcGCGCCGUgcUGGCCu -3'
miRNA:   3'- -UAGa---UAUGaCGU--CGCGGUAa-ACCGGc -5'
29481 3' -52.4 NC_006151.1 + 120499 0.66 0.963818
Target:  5'- uUCUGgacgcUGCUGCAGCGCaaccagcuGCCGg -3'
miRNA:   3'- uAGAU-----AUGACGUCGCGguaaac--CGGC- -5'
29481 3' -52.4 NC_006151.1 + 70627 0.66 0.957896
Target:  5'- gAUCcu--CgGCGGCGCCG--UGGCCGc -3'
miRNA:   3'- -UAGauauGaCGUCGCGGUaaACCGGC- -5'
29481 3' -52.4 NC_006151.1 + 137143 0.66 0.953874
Target:  5'- -----cGCgacGCGGCGCCGgagaUGGCCGc -3'
miRNA:   3'- uagauaUGa--CGUCGCGGUaa--ACCGGC- -5'
29481 3' -52.4 NC_006151.1 + 39838 0.66 0.953874
Target:  5'- cGUCUc--CUGCGGcCGCCGg--GGCCu -3'
miRNA:   3'- -UAGAuauGACGUC-GCGGUaaaCCGGc -5'
29481 3' -52.4 NC_006151.1 + 119243 0.66 0.953874
Target:  5'- uUCUAccaggugGCGGCGCCcuaccUGGCCGg -3'
miRNA:   3'- uAGAUauga---CGUCGCGGuaa--ACCGGC- -5'
29481 3' -52.4 NC_006151.1 + 6920 0.67 0.946915
Target:  5'- cGUCUAcuUUGCauguccggccccgagGGCGCCAUcUUGGCCc -3'
miRNA:   3'- -UAGAUauGACG---------------UCGCGGUA-AACCGGc -5'
29481 3' -52.4 NC_006151.1 + 81392 0.67 0.940286
Target:  5'- -----cGCcGCGGCGCCcaggUUGGCCa -3'
miRNA:   3'- uagauaUGaCGUCGCGGua--AACCGGc -5'
29481 3' -52.4 NC_006151.1 + 134115 0.67 0.929927
Target:  5'- ----cUGCUGguGUGCCGgaguccggGGCCGg -3'
miRNA:   3'- uagauAUGACguCGCGGUaaa-----CCGGC- -5'
29481 3' -52.4 NC_006151.1 + 63998 0.67 0.929927
Target:  5'- cGUCUgcGUGCggUGCGGCGCCAg--GcGCCc -3'
miRNA:   3'- -UAGA--UAUG--ACGUCGCGGUaaaC-CGGc -5'
29481 3' -52.4 NC_006151.1 + 86238 0.68 0.899429
Target:  5'- -----cGCUGCgacaucGGCGCCGUgcUGGCCGu -3'
miRNA:   3'- uagauaUGACG------UCGCGGUAa-ACCGGC- -5'
29481 3' -52.4 NC_006151.1 + 101912 0.69 0.878047
Target:  5'- ---cAUGCccaaGCGGCGCCGgcccccgUGGCCGg -3'
miRNA:   3'- uagaUAUGa---CGUCGCGGUaa-----ACCGGC- -5'
29481 3' -52.4 NC_006151.1 + 5721 0.7 0.828943
Target:  5'- -gCUGUGCUgGUGGCGCCGggguccgaGGCCGc -3'
miRNA:   3'- uaGAUAUGA-CGUCGCGGUaaa-----CCGGC- -5'
29481 3' -52.4 NC_006151.1 + 129102 0.71 0.801619
Target:  5'- ----uUGCUGCgcacgAGCGCCAg--GGCCGa -3'
miRNA:   3'- uagauAUGACG-----UCGCGGUaaaCCGGC- -5'
29481 3' -52.4 NC_006151.1 + 113805 0.73 0.690542
Target:  5'- ----cUGCUGCGGCGCCAc--GGCCu -3'
miRNA:   3'- uagauAUGACGUCGCGGUaaaCCGGc -5'
29481 3' -52.4 NC_006151.1 + 61777 0.74 0.637053
Target:  5'- ---gGUGCUGCGGCGCgAggccGGCCGg -3'
miRNA:   3'- uagaUAUGACGUCGCGgUaaa-CCGGC- -5'
29481 3' -52.4 NC_006151.1 + 47683 1.08 0.005409
Target:  5'- uAUCUAUACUGCAGCGCCAUUUGGCCGg -3'
miRNA:   3'- -UAGAUAUGACGUCGCGGUAAACCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.