miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29481 5' -51.3 NC_006151.1 + 39962 0.66 0.989144
Target:  5'- cCCCGGGcGCcgucGCcgCCGCGGg----- -3'
miRNA:   3'- -GGGCCCuUGa---CGuaGGCGUCauuuaa -5'
29481 5' -51.3 NC_006151.1 + 23707 0.66 0.989144
Target:  5'- cCCCGGGGcaGCcGUAguacUCGCGGUGGAc- -3'
miRNA:   3'- -GGGCCCU--UGaCGUa---GGCGUCAUUUaa -5'
29481 5' -51.3 NC_006151.1 + 59223 0.66 0.987643
Target:  5'- cCCCGGGAACgucUGCcggCUGCGGc----- -3'
miRNA:   3'- -GGGCCCUUG---ACGua-GGCGUCauuuaa -5'
29481 5' -51.3 NC_006151.1 + 103688 0.66 0.987643
Target:  5'- -gCGGGGguGCUGCGcgCCGCcGUGGAg- -3'
miRNA:   3'- ggGCCCU--UGACGUa-GGCGuCAUUUaa -5'
29481 5' -51.3 NC_006151.1 + 6239 0.66 0.987643
Target:  5'- gCCGGGAgcccugGCUGCcgCCGuCGGg----- -3'
miRNA:   3'- gGGCCCU------UGACGuaGGC-GUCauuuaa -5'
29481 5' -51.3 NC_006151.1 + 37747 0.66 0.98217
Target:  5'- cUCUGGGccCUGCcgCaCGCGGUGAGc- -3'
miRNA:   3'- -GGGCCCuuGACGuaG-GCGUCAUUUaa -5'
29481 5' -51.3 NC_006151.1 + 61141 0.66 0.98217
Target:  5'- -gCGGGugaAGCUGCGUCgGCAGg----- -3'
miRNA:   3'- ggGCCC---UUGACGUAGgCGUCauuuaa -5'
29481 5' -51.3 NC_006151.1 + 36869 0.67 0.977621
Target:  5'- gCCGGGGACgGCGgggcgcccCCGCAGa----- -3'
miRNA:   3'- gGGCCCUUGaCGUa-------GGCGUCauuuaa -5'
29481 5' -51.3 NC_006151.1 + 40112 0.67 0.973406
Target:  5'- -aCGGGGACUcuguggagaucgucgGCGUCCGCGGc----- -3'
miRNA:   3'- ggGCCCUUGA---------------CGUAGGCGUCauuuaa -5'
29481 5' -51.3 NC_006151.1 + 124997 0.67 0.972268
Target:  5'- aCCUGGGcGACUGCGuccUCCGCGa------ -3'
miRNA:   3'- -GGGCCC-UUGACGU---AGGCGUcauuuaa -5'
29481 5' -51.3 NC_006151.1 + 4150 0.67 0.972268
Target:  5'- cCCCGGGGAUcGCGU-CGCGGa----- -3'
miRNA:   3'- -GGGCCCUUGaCGUAgGCGUCauuuaa -5'
29481 5' -51.3 NC_006151.1 + 117577 0.67 0.971392
Target:  5'- cCCCGcGGAggaugggccgcgugGC-GCcgCCGCAGUAGAc- -3'
miRNA:   3'- -GGGC-CCU--------------UGaCGuaGGCGUCAUUUaa -5'
29481 5' -51.3 NC_006151.1 + 14388 0.67 0.969271
Target:  5'- cCUCGGGggUcgcGCGUCCGUcgccuaGGUGAGUc -3'
miRNA:   3'- -GGGCCCuuGa--CGUAGGCG------UCAUUUAa -5'
29481 5' -51.3 NC_006151.1 + 110083 0.68 0.966049
Target:  5'- gCCCaGGAGCUGCuccccCCGCgcguGGUGGAg- -3'
miRNA:   3'- -GGGcCCUUGACGua---GGCG----UCAUUUaa -5'
29481 5' -51.3 NC_006151.1 + 136360 0.68 0.962596
Target:  5'- cCCCGcGGGGCUGCucucGUUCGCGGc----- -3'
miRNA:   3'- -GGGC-CCUUGACG----UAGGCGUCauuuaa -5'
29481 5' -51.3 NC_006151.1 + 130720 0.68 0.958906
Target:  5'- gCCCGGGGGCccgcGCggCCGCGGc----- -3'
miRNA:   3'- -GGGCCCUUGa---CGuaGGCGUCauuuaa -5'
29481 5' -51.3 NC_006151.1 + 131909 0.68 0.958906
Target:  5'- -aCGGGGGCgGCAgcagggccUCCGCGGUGc--- -3'
miRNA:   3'- ggGCCCUUGaCGU--------AGGCGUCAUuuaa -5'
29481 5' -51.3 NC_006151.1 + 43244 0.68 0.950795
Target:  5'- aCCGGGGAgUGCGUgCgGguGUGGGg- -3'
miRNA:   3'- gGGCCCUUgACGUA-GgCguCAUUUaa -5'
29481 5' -51.3 NC_006151.1 + 100755 0.73 0.757132
Target:  5'- gCCCGaGGAGCUGCGcgaggCCGCGGa----- -3'
miRNA:   3'- -GGGC-CCUUGACGUa----GGCGUCauuuaa -5'
29481 5' -51.3 NC_006151.1 + 4658 0.77 0.557348
Target:  5'- gUCGGGGGcCUGCAUCCGCGGg----- -3'
miRNA:   3'- gGGCCCUU-GACGUAGGCGUCauuuaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.