miRNA display CGI


Results 1 - 20 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
29482 5' -57.5 NC_006151.1 + 47420 1.11 0.001568
Target:  5'- gGCCACCAUCUGAGUGCCCAACCGGGGc -3'
miRNA:   3'- -CGGUGGUAGACUCACGGGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 91905 0.81 0.155156
Target:  5'- cGCCACCGUCUG-GUGCgcucggaggccaucuCCAcgccGCCGGGGg -3'
miRNA:   3'- -CGGUGGUAGACuCACG---------------GGU----UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 18748 0.78 0.23801
Target:  5'- cGCCGCCGgggccccacgGGGUGCCCGgggcccggGCCGGGGc -3'
miRNA:   3'- -CGGUGGUaga-------CUCACGGGU--------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 126047 0.76 0.322565
Target:  5'- cGCCGCCGUCggcaaggugguccUGGGUGCCa---CGGGGg -3'
miRNA:   3'- -CGGUGGUAG-------------ACUCACGGguugGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 102277 0.76 0.345595
Target:  5'- cGCUGCCg---GAGcgcgGCCCGGCCGGGGa -3'
miRNA:   3'- -CGGUGGuagaCUCa---CGGGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 81698 0.75 0.353272
Target:  5'- gGUCGCCcgCgcGAG-GUCCAGCCGGGGc -3'
miRNA:   3'- -CGGUGGuaGa-CUCaCGGGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 121441 0.74 0.393434
Target:  5'- cGCCgGCCucgCUG-GUGCCCGcggaGCUGGGGg -3'
miRNA:   3'- -CGG-UGGua-GACuCACGGGU----UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 69691 0.74 0.410307
Target:  5'- cGCCucGCCGUCgauGGUGgCCGccGCCGGGGg -3'
miRNA:   3'- -CGG--UGGUAGac-UCACgGGU--UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 32333 0.73 0.454388
Target:  5'- cGUCcCCAUCUccGAG-GCCCGaggcGCCGGGGc -3'
miRNA:   3'- -CGGuGGUAGA--CUCaCGGGU----UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 5978 0.73 0.46351
Target:  5'- uGCUcggaGCCugaugGAGaGCCCGACCGGGGg -3'
miRNA:   3'- -CGG----UGGuaga-CUCaCGGGUUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 28223 0.73 0.469028
Target:  5'- cGCC-CCGUCgagGGGgccgggccgacggGCCCAuugGCCGGGGc -3'
miRNA:   3'- -CGGuGGUAGa--CUCa------------CGGGU---UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 5634 0.73 0.472726
Target:  5'- cGCCGCCGggcgCcGAGaccgGCCCGGCggCGGGGg -3'
miRNA:   3'- -CGGUGGUa---GaCUCa---CGGGUUG--GCCCC- -5'
29482 5' -57.5 NC_006151.1 + 5707 0.73 0.49143
Target:  5'- gGCCACCGcugCUGGcuGUGCUgGuggcGCCGGGGu -3'
miRNA:   3'- -CGGUGGUa--GACU--CACGGgU----UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 3446 0.72 0.539581
Target:  5'- aGCCGCCGUCgggcgcgGGGUgcucgggcauggGCCCGAgCGGGc -3'
miRNA:   3'- -CGGUGGUAGa------CUCA------------CGGGUUgGCCCc -5'
29482 5' -57.5 NC_006151.1 + 48643 0.71 0.559298
Target:  5'- cGCCACCGccgCUGcAGcagcaGCCCccGCCGGGGc -3'
miRNA:   3'- -CGGUGGUa--GAC-UCa----CGGGu-UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 17078 0.71 0.598266
Target:  5'- gGCCGCCG-CcGGGUcaggcgcgcGCCCGucggggcGCCGGGGg -3'
miRNA:   3'- -CGGUGGUaGaCUCA---------CGGGU-------UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 46682 0.7 0.633561
Target:  5'- cGCCAUCGuccggcgagggguccUCUGcgcagcauGGUGCCUcgggGGCCGGGGc -3'
miRNA:   3'- -CGGUGGU---------------AGAC--------UCACGGG----UUGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 45572 0.7 0.64971
Target:  5'- gGCCAUCGUCccGGGacgGCCCGaggggGCgGGGGg -3'
miRNA:   3'- -CGGUGGUAGa-CUCa--CGGGU-----UGgCCCC- -5'
29482 5' -57.5 NC_006151.1 + 64761 0.7 0.659788
Target:  5'- gGCCACCGUgCgcgGGG-GCUgGuuGCCGGGGc -3'
miRNA:   3'- -CGGUGGUA-Ga--CUCaCGGgU--UGGCCCC- -5'
29482 5' -57.5 NC_006151.1 + 5877 0.69 0.669844
Target:  5'- gGCCGCCGggggccccggccUCUgccgcugcGAGUGCU--GCCGGGGu -3'
miRNA:   3'- -CGGUGGU------------AGA--------CUCACGGguUGGCCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.